1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aaattaatttcattatttgaaggaataccaatttcaataatgcaaacataaccctttcagatcaaaattgggaactaatgtttgtacctctctgaaacagCCACTTGGTGACCTGGGAACACTAGAAGCTGGAGAGAACGGGGAAGCCCATTTCTCAGGACCGAAGGAGAAATTGAGAGTGGTTGACTTGATCGGCCGCT
species | Zea mays |
transcript | GRMZM2G175728_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAGAAAGCACTGGCAATGTCTATAATCCGCCAGATCATTTATCTGATAAG CCACTTGGTGACCTGGGAACACTAGAAGCTGGAGAGAACGGGGAAGCCCATEST: gi|211190909|gb|FL449390.1|FL449390
genomic: CAGAAAGCACTGGCAATGTCTATAATCCGCCAGATCATTTATCTGATAAGgtaatattcc ... tctgaaacagCCACTTGGTGACCTGGGAACACTAGAAGCTGGAGAGAACGGGGAAGCCCAT
EST: CAGAAAGCACTGGCAATGTCTATAATCCGCCAGATCATTTATCTGATAAG CCACTTGGTGACCTGGGAACACTAGAAGCTGGAGAGAACGGGGAAGCCCATEST: gi|113702774|gb|EE680278.1|EE680278
genomic: CAGAAAGCACTGGCAATGTCTATAATCCGCCAGATCATTTATCTGATAAGgtaatattcc ... tctgaaacagCCACTTGGTGACCTGGGAACACTAGAAGCTGGAGAGAACGGGGAAGCCCAT
EST: CAGAAAGCACTGGCAATGTCTATAATCCGCCAGATCATTTATCTGATAAG CCACTTGGTGACCTGGGAACACTAGAAGCTGGAGAGAACGGGGAAGCCCATEST: gi|37396350|gb|CF635464.1|CF635464
genomic: CAGAAAGCACTGGCAATGTCTATAATCCGCCAGATCATTTATCTGATAAGgtaatattcc ... tctgaaacagCCACTTGGTGACCTGGGAACACTAGAAGCTGGAGAGAACGGGGAAGCCCAT
EST: CAGAAAGCACTGGCAATGTCTATAATCCGCCAGATCATTTATCTGATAAG CCACTTGGTGACCTGGGAACACTAGAAGCTGGAGAGAACGGGGAAGCCCATEST: gi|18170918|gb|BM340758.1|BM340758
genomic: CAGAAAGCACTGGCAATGTCTATAATCCGCCAGATCATTTATCTGATAAGgtaatattcc ... tctgaaacagCCACTTGGTGACCTGGGAACACTAGAAGCTGGAGAGAACGGGGAAGCCCAT
EST: CAGAAAGCACTGGCAATGTCTATAATCCGCCAGATCATTTATCTGATAAG CCACTTGGTGACCTGGGAACACTAGAAGCTGGAGAGAACGGGGAAGCCCATEST: gi|17929911|gb|BM266871.1|BM266871
genomic: CAGAAAGCACTGGCAATGTCTATAATCCGCCAGATCATTTATCTGATAAGgtaatattcc ... tctgaaacagCCACTTGGTGACCTGGGAACACTAGAAGCTGGAGAGAACGGGGAAGCCCAT
EST: CAGAAAGCACTGGCAATGTCTATAATCCGCCAGATCATTTATCTGATAAG CCACTTGGTGACCTGGGAACACTAGAAGCTGGAGAGAACGGGGAAGCCCAT
genomic: CAGAAAGCACTGGCAATGTCTATAATCCGCCAGATCATTTATCTGATAAGgtaatattcc ... tctgaaacagCCACTTGGTGACCTGGGAACACTAGAAGCTGGAGAGAACGGGGAAGCCCAT
acataaccctttcagatcaaaattgggaactaatgtttgtacctctctgaaacagCCACTTGGTGACCTGGGAACACTAGAAGCTGGAGAGAACGGGGAAGCCCATTTCTCAGGACCGAAGGAGAAATTGAGAGTGGTTGACTTGATCGGCCGCT
aactaat putative branch site (score: 19)
tacctctct putative PPT
atcaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaattaatttcattatttgaaggaataccaatttcaataatgcaaacataaccctttcagatcaaaattgggaactaatgtttgtacctctctgaaacagCCACTTGGTGACCTGGGAACACTAGAAGCTGGAGAGAACGGGGAAGCCCATTTCTCAGGACCGAAGGAGAAATTGAGAGTGGTTGACTTGATCGGCCGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - -tttcatt
- - - - - - - - - - - - - - - - - - - aatgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atcaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgt