1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gactaccttcagattgcttgcctgttctattttgctaatatgctgcatagttttgtatattaggactaattctgtgctcccccccccccctaacatgcagATTTCTTAGTTTCTGCTGCTGTAGCTGAGTTTAAAGGGCCTGTTGTATTTGGTGTTGTTCGTCTGGCCCAAGTAAACATGGAGTTGGCTAGAGTTGAAGC
species | Zea mays |
transcript | GRMZM2G175728_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCATCAAACAGGTCGAGATGCACGACTGATTGGCCAAGGGAACCCAAATG ATTTCTTAGTTTCTGCTGCTGTAGCTGAGTTTAAAGGGCCTGTTGTATTTGEST: gi|18170918|gb|BM340758.1|BM340758
genomic: TCATCAAACAGGTCGAGATGCACGACTGATTGGCCAAGGGAACCCAAATGgtttgtgtta ... taacatgcagATTTCTTAGTTTCTGCTGCTGTAGCTGAGTTTAAAGGGCCTGTTGTATTTG
EST: TCATCAAACAGGTCGAGATGCACGACTGATTGGCCAAGGGAACCCAAATG ATTTCTTAGTTTCTGCTGCTGTAGCTGAGTTTAAAGGGCCTGTTGTATTTGEST: gi|17929911|gb|BM266871.1|BM266871
genomic: TCATCAAACAGGTCGAGATGCACGACTGATTGGCCAAGGGAACCCAAATGgtttgtgtta ... taacatgcagATTTCTTAGTTTCTGCTGCTGTAGCTGAGTTTAAAGGGCCTGTTGTATTTG
EST: TGCACGACTGATTGGCCAAGGGAACCCAAATG ATATCTTAGTTTCTGCTGCTGTAGCTGAGTTTAAAGGGCCTGTTGTATTTG
genomic: TGCACGACTGATTGGCCAAGGGAACCCAAATGgtttgtgtta ... taacatgcagATTTCTTAGTTTCTGCTGCTGTAGCTGAGTTTAAAGGGCCTGTTGTATTTG
catagttttgtatattaggactaattctgtgctcccccccccccctaacatgcagATTTCTTAGTTTCTGCTGCTGTAGCTGAGTTTAAAGGGCCTGTTGTATTTGGTGTTGTTCGTCTGGCCCAAGTAAACATGGAGTTGGCTAGAGTTGAAGC
ccctaac putative branch site (score: 39)
ttctgtgctccccccc CT-rich tract
ttttgtatatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gactaccttcagattgcttgcctgttctattttgctaatatgctgcatagttttgtatattaggactaattctgtgctcccccccccccctaacatgcagATTTCTTAGTTTCTGCTGCTGTAGCTGAGTTTAAAGGGCCTGTTGTATTTGGTGTTGTTCGTCTGGCCCAAGTAAACATGGAGTTGGCTAGAGTTGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - accttca
- - - - - - - tgcttgc
- - - - - - - - - - - - - - -ttttgct
- - - - - - - - - - - - - - - - - - - -atgctgc