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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCGTTGCCGACGACTCCCTCTGGCGCAGATTCTGCGGTGAGGACCTGGGGCTCGACGCTCCCGTCGATCCAGAGGGCCGGCCTCTTCCCTCCTTCCAGgttcgcgatgttagacctcggtcttttgtttttcctgttttcccctttgtcccgattgcagcaacagaggagcgagcggaccatttcatggagtccacta...

Basic information

species Zea mays
transcript GRMZM2G173354_T03
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211427670|gb|FK998936.1|FK998936
EST:     GGCTCGACGCTCCCGTCGATCCAGAGGGCCGGCCTCTTCCCTCCTTCCAG                         GTTGCATATAAACTTTGGTTGGAGTCTTTTGGCATGTACCCTCTACCTATG
genomic: GGCTCGACGCTCCCGTCGATCCAGAGGGCCGGCCTCTTCCCTCCTTCCAGgttcgcgatg ... ctgttttcagGTTGCATATAAAGTTTGGTCGGAGTCTTTTGGCATGTACCCTCTACCTATG
EST: gi|211425076|gb|FK998927.1|FK998927
EST:     GGCTCGACGCTCCCGTCGATCCAGAGGGCCGGCCTCTTCCCTCCTTCCAG                         GTTGCATATAAAGTTTGGTCGGAGTCTTTTGGCATGTACCCTCTACCTATG
genomic: GGCTCGACGCTCCCGTCGATCCAGAGGGCCGGCCTCTTCCCTCCTTCCAGgttcgcgatg ... ctgttttcagGTTGCATATAAAGTTTGGTCGGAGTCTTTTGGCATGTACCCTCTACCTATG
EST: gi|211427677|gb|FK998943.1|FK998943
EST:     GGCTCGACGCTCCCGTCGATCCAGAGGGCCGGCCTCTTCCCTCCTTCCAG                         GTTTGCATATAAAGTTTGGTCGGAGTCTTTTGGCATGTACCCTCTACCTAT
genomic: GGCTCGACGCTCCCGTCGATCCAGAGGGCCGGCCTCTTCCCTCCTTCCAGgttcgcgatg ... ctgttttcagGTT-GCATATAAAGTTTGGTCGGAGTCTTTTGGCATGTACCCTCTACCTAT
EST: gi|211427673|gb|FK998939.1|FK998939
EST:     GGCTCGACGCTCCCGTCGATCCAGAGGGCCGGCCTCTTCCCTCCTTCCAG                         GTTGCATATAAAGTTTGGTCGGAGTCTTTTGGCATGTACCCTCTACCTATG
genomic: GGCTCGACGCTCCCGTCGATCCAGAGGGCCGGCCTCTTCCCTCCTTCCAGgttcgcgatg ... ctgttttcagGTTGCATATAAAGTTTGGTCGGAGTCTTTTGGCATGTACCCTCTACCTATG
EST: gi|86467751|gb|DY234121.1|DY234121
EST:     GGCTCGACGCTCCCGTCGATCCAGAGGGCCGGCCTCTTCCCTCCTTCCAG                         GTTGCATATAAAGTTTGGTCGGAGTCTTTTGGCATGTACCCTCTACCTATG
genomic: GGCTCGACGCTCCCGTCGATCCAGAGGGCCGGCCTCTTCCCTCCTTCCAGgttcgcgatg ... ctgttttcagGTTGCATATAAAGTTTGGTCGGAGTCTTTTGGCATGTACCCTCTACCTATG
EST: gi|211432869|gb|FK998973.1|FK998973
EST:     GGCTCGACGCTCCCGTCGATCCAGAGGGCCGGCCTCTTCCCTCCTTCCAG                         GTTGCATATAAAGTTTGGTCGGAGTCTTTTGGCATGTACCCTCTACCTATG
genomic: GGCTCGACGCTCCCGTCGATCCAGAGGGCCGGCCTCTTCCCTCCTTCCAGgttcgcgatg ... ctgttttcagGTTGCATATAAAGTTTGGTCGGAGTCTTTTGGCATGTACCCTCTACCTATG