1 5' 3' | 2 5' 3' | 3 5' 3' |
...gtacttcaaaaaagaacaagtgaagggaaatcatatggtgtacaattctaaattccttgtaagtgttggttcgttatatcaaaattcattctgttttcagGTTGCATATAAAGTTTGGTCGGAGTCTTTTGGCATGTACCCTCTACCTATGGTAAAGAGAGTGAGACAATTCTGGACTTCAATGAAAACTTGGTTGTCTG
species | Zea mays |
transcript | GRMZM2G173354_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGCTCGACGCTCCCGTCGATCCAGAGGGCCGGCCTCTTCCCTCCTTCCAG GTTGCATATAAACTTTGGTTGGAGTCTTTTGGCATGTACCCTCTACCTATGEST: gi|211425076|gb|FK998927.1|FK998927
genomic: GGCTCGACGCTCCCGTCGATCCAGAGGGCCGGCCTCTTCCCTCCTTCCAGgttcgcgatg ... ctgttttcagGTTGCATATAAAGTTTGGTCGGAGTCTTTTGGCATGTACCCTCTACCTATG
EST: GGCTCGACGCTCCCGTCGATCCAGAGGGCCGGCCTCTTCCCTCCTTCCAG GTTGCATATAAAGTTTGGTCGGAGTCTTTTGGCATGTACCCTCTACCTATGEST: gi|211427677|gb|FK998943.1|FK998943
genomic: GGCTCGACGCTCCCGTCGATCCAGAGGGCCGGCCTCTTCCCTCCTTCCAGgttcgcgatg ... ctgttttcagGTTGCATATAAAGTTTGGTCGGAGTCTTTTGGCATGTACCCTCTACCTATG
EST: GGCTCGACGCTCCCGTCGATCCAGAGGGCCGGCCTCTTCCCTCCTTCCAG GTTTGCATATAAAGTTTGGTCGGAGTCTTTTGGCATGTACCCTCTACCTATEST: gi|211427673|gb|FK998939.1|FK998939
genomic: GGCTCGACGCTCCCGTCGATCCAGAGGGCCGGCCTCTTCCCTCCTTCCAGgttcgcgatg ... ctgttttcagGTT-GCATATAAAGTTTGGTCGGAGTCTTTTGGCATGTACCCTCTACCTAT
EST: GGCTCGACGCTCCCGTCGATCCAGAGGGCCGGCCTCTTCCCTCCTTCCAG GTTGCATATAAAGTTTGGTCGGAGTCTTTTGGCATGTACCCTCTACCTATGEST: gi|86467751|gb|DY234121.1|DY234121
genomic: GGCTCGACGCTCCCGTCGATCCAGAGGGCCGGCCTCTTCCCTCCTTCCAGgttcgcgatg ... ctgttttcagGTTGCATATAAAGTTTGGTCGGAGTCTTTTGGCATGTACCCTCTACCTATG
EST: GGCTCGACGCTCCCGTCGATCCAGAGGGCCGGCCTCTTCCCTCCTTCCAG GTTGCATATAAAGTTTGGTCGGAGTCTTTTGGCATGTACCCTCTACCTATGEST: gi|211432869|gb|FK998973.1|FK998973
genomic: GGCTCGACGCTCCCGTCGATCCAGAGGGCCGGCCTCTTCCCTCCTTCCAGgttcgcgatg ... ctgttttcagGTTGCATATAAAGTTTGGTCGGAGTCTTTTGGCATGTACCCTCTACCTATG
EST: GGCTCGACGCTCCCGTCGATCCAGAGGGCCGGCCTCTTCCCTCCTTCCAG GTTGCATATAAAGTTTGGTCGGAGTCTTTTGGCATGTACCCTCTACCTATG
genomic: GGCTCGACGCTCCCGTCGATCCAGAGGGCCGGCCTCTTCCCTCCTTCCAGgttcgcgatg ... ctgttttcagGTTGCATATAAAGTTTGGTCGGAGTCTTTTGGCATGTACCCTCTACCTATG
ttctaaattccttgtaagtgttggttcgttatatcaaaattcattctgttttcagGTTGCATATAAAGTTTGGTCGGAGTCTTTTGGCATGTACCCTCTACCTATGGTAAAGAGAGTGAGACAATTCTGGACTTCAATGAAAACTTGGTTGTCTG
ttctaaa putative branch site (score: 2)
ttcattctgttttc putative PPT
ttatatcaaaattcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttcaaaaaagaacaagtgaagggaaatcatatggtgtacaattctaaattccttgtaagtgttggttcgttatatcaaaattcattctgttttcagGTTGCATATAAAGTTTGGTCGGAGTCTTTTGGCATGTACCCTCTACCTATGGTAAAGAGAGTGAGACAATTCTGGACTTCAATGAAAACTTGGTTGTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA