1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TGGAAAACGATTTCACCCCCAAGGTTGCTGATTTTGGGCTGGCAAAGGAAGCATCAGATGGGATGGATCATATTTCTACTCAGGTCATGGGGACTTTCGGgtaagacctcagctagtgttaatcaacaagtgccatcatacaattcttgcatgcacttttgatgatggtgatttaaacagttaatgttgtgctatatattatggatcatctgattcattttcccacatgctctgcag
species | Zea mays |
transcript | GRMZM2G171620_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATGGGATGGATCATATTTCTACTCAGGTCATGGGGACTTTCGG GTACGTTGCCCCAGAGTATGCGATGACAGGGCATCTGCTTGTCAAGAGCGAEST: gi|71432396|gb|DR813446.1|DR813446
genomic: ATGGGATGGATCATATTTCTACTCAGGTCATGGGGACTTTCGGgtaagacctc ... tgctctgcagGTACGTTGCCCCAGAGTATGCGATGACAGGGCATCTGCTTGTCAAGAGCGA
EST: GCATCAGATGGGATGGATCATATTTCTACTCAGGTCATGGGGACTTTCGG GTACGTTGCCCCAGAGTATGCGATGACAGGGCATCTGCTTGTCAAGAGCGA
genomic: GCATCAGATGGGATGGATCATATTTCTACTCAGGTCATGGGGACTTTCGGgtaagacctc ... tgctctgcagGTACGTTGCCCCAGAGTATGCGATGACAGGGCATCTGCTTGTCAAGAGCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGAAAACGATTTCACCCCCAAGGTTGCTGATTTTGGGCTGGCAAAGGAAGCATCAGATGGGATGGATCATATTTCTACTCAGGTCATGGGGACTTTCGGgtaagacctcagctagtgttaatcaacaagtgccatcatacaattcttgcatgcacttttgatgatggtgatttaaacagttaatgttgtgctatatattatggatcatctgattcattttcccacatgctctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA