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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTCAGCCTTACTGATTAGCAACAGATTTTTGCAAAAGAAGGTGCCAATAAACTCATCCACTTTTGGTGATTATGTTGCTACATATGTTCATTATCCAGgtgcgtagatgttgatacattcatttcactagccttctgtagtggtttttgttgttttatttatctaatccttgttcttttctttatctaatcatacacatatcacag

Basic information

species Zea mays
transcript GRMZM2G171620_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G171620_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os04g43020.1 (Oryza sativa), 5'ss of exon 4
ACTTCAGCCTTACTGATTAGCAACAGATTTTTGCAAAAGAAGGTGCCAATAAACTCATCCACTTTTGGTGATTATGTTGCTACATATGTTCATTATCCAGgtgcgtag-atgttgatacattcatttcactagccttctgtagtggtttttgttgttttatt-tatctaatccttgttcttttctttatctaatcatacacatatcacag
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||   |  | ||||||||||||||| |||| ||   || ||  |   || |  |||     ||||  ||||    ||    || ||  | ||| ||||| | |   ||||                           
ACTTCAGCCTTACTGACTAGCAACAGATTTTTGCAAAAGAAGGTGCCAATAAACTCGTCCATATTTGGTGATTATAACGTAATATATGTTCATTATCCTGgtgagtgacatatttttttgttgacatcaa----cttcaatagtataattcccagtattgctgtatgtaatcatagaaattttgcag-----------------------