1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gcgctaaactttatttcagttctaacattgagttctgattggttctatgagataagaacattggcatacttaaaaatatgacccctgttcctttttgcagATATGATAAGACCTCTAGATGTCGGCCTAGATAATGAAGCCCAAATTGCACGCAATTGGAGTAGTTCTACGCGTCCATCAAATGGGAGACGAGGACGCAA
species | Zea mays |
transcript | GRMZM2G162175_T04 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGAAGGTCCCATATCTGAAGAGGCGCTTGAGAGAGTCCGTGCACTGTTAG ATATGATAAGACCTCTAGATGTCGGCCTAGATAATGAAGCCCAAATTGCACEST: gi|211037838|gb|FL428696.1|FL428696
genomic: AGAAGGTCCCATATCTGAAGAGGCGCTTGAGAGAGTCCGTGCACTGTTAGgtgagtcaaa ... ctttttgcagATATGATAAGACCTCTAGATGTCGGCCTAGATAATGAAGCCCAAATTGCAC
EST: AGAAGGTCCCATATCTGAAGAGGCGCTTGAGAGAGTCCGTGCACTGTTAG ATATGATAAGACCTCTAGATGTCGGCCTAGATAATGAAGCCCAAATTGCACEST: gi|149096944|gb|EE182743.2|EE182743
genomic: AGAAGGTCCCATATCTGAAGAGGCGCTTGAGAGAGTCCGTGCACTGTTAGgtgagtcaaa ... ctttttgcagATATGATAAGACCTCTAGATGTCGGCCTAGATAATGAAGCCCAAATTGCAC
EST: AGAAGGTCCCATATCTGAAGAGGCGCTTGAGAGAGTCCGTGCACTGTTAG ATATGATAAGACCTCTAGATGTCGGCCTEST: gi|149078131|gb|EE166880.2|EE166880
genomic: AGAAGGTCCCATATCTGAAGAGGCGCTTGAGAGAGTCCGTGCACTGTTAGgtgagtcaaa ... ctttttgcagATATGATAAGACCTCTAGATGTCGGCCT
EST: AGAAGGTCCCATATCTGAAGAGGCGCTTGAGAGAGTCCGTGCACTGTTAG ATATGATAAGACCTCTAGATGTCGGCCTEST: gi|74240567|gb|DT648481.1|DT648481
genomic: AGAAGGTCCCATATCTGAAGAGGCGCTTGAGAGAGTCCGTGCACTGTTAGgtgagtcaaa ... ctttttgcagATATGATAAGACCTCTAGATGTCGGCCT
EST: AGAAGGTCCCATATCTGAAGAGGCGCTTGAGAGAGTCCGTGCACTGTTAG ATATGATAAGACCTCTAGATGTCGGCCTAGATAATGAAGCCCAAATTGCACEST: gi|101382866|gb|EB813487.1|EB813487
genomic: AGAAGGTCCCATATCTGAAGAGGCGCTTGAGAGAGTCCGTGCACTGTTAGgtgagtcaaa ... ctttttgcagATATGATAAGACCTCTAGATGTCGGCCTAGATAATGAAGCCCAAATTGCAC
EST: AGAAGGTCCCATATCTGAAGAGGCGCTTGAGAGAGTCCGTGCACTGTTAG ATATGATAAGACCTCTAGATGTCGGCCTAGATAATGAAGCCCAAATTGCACEST: gi|76012159|gb|DT939329.1|DT939329
genomic: AGAAGGTCCCATATCTGAAGAGGCGCTTGAGAGAGTCCGTGCACTGTTAGgtgagtcaaa ... ctttttgcagATATGATAAGACCTCTAGATGTCGGCCTAGATAATGAAGCCCAAATTGCAC
EST: AGAAGGTCCCATATCTGAAGAGGCGCTTGAGAGAGTCCGTGCACTGTTAG ATATGATAAGACCTCTAGATGTCGGCCTAGATAATGAAGCCCAAATTGCACEST: gi|149013590|gb|EE043059.2|EE043059
genomic: AGAAGGTCCCATATCTGAAGAGGCGCTTGAGAGAGTCCGTGCACTGTTAGgtgagtcaaa ... ctttttgcagATATGATAAGACCTCTAGATGTCGGCCTAGATAATGAAGCCCAAATTGCAC
EST: AGAAAGTCCCATATCTGAAGAGGCGCTTGAGAGAGTCCGTGCACTGTTAG ATATGATAAGACCTCTAGATGTCGGCCTAGATAATGAAGCCEST: gi|148969813|gb|EE020704.2|EE020704
genomic: AGAAGGTCCCATATCTGAAGAGGCGCTTGAGAGAGTCCGTGCACTGTTAGgtgagtcaaa ... ctttttgcagATATGATAAGACCTCTAGATGTCGGCCTAGATAATGAAGCC
EST: AGAAGGTCCCATATCTGAAGAGGCGCTTGAGAGAGTCCGTGCACTGTTAG ATATGATAAGACCTCTAGATGTCGGCCTAGATAATGAAGCCCAAATTGCACEST: gi|78119801|gb|DV538185.1|DV538185
genomic: AGAAGGTCCCATATCTGAAGAGGCGCTTGAGAGAGTCCGTGCACTGTTAGgtgagtcaaa ... ctttttgcagATATGATAAGACCTCTAGATGTCGGCCTAGATAATGAAGCCCAAATTGCAC
EST: AGAAGGTCCCATATCTGAAGAGGCGCTTGAGAGAGTCCGTGCACTGTTAG ATATGATAAGACCTCTAGATGTCGGCCTAGATAATGAAGCCCAAATTGCACEST: gi|31359391|gb|CD443748.1|CD443748
genomic: AGAAGGTCCCATATCTGAAGAGGCGCTTGAGAGAGTCCGTGCACTGTTAGgtgagtcaaa ... ctttttgcagATATGATAAGACCTCTAGATGTCGGCCTAGATAATGAAGCCCAAATTGCAC
EST: AGAAGGTCCCATATCTGAAGAGGCGCTTGAGAGAGTCCGTGCACTGTTAG ATATGATAAGACCTCTAGATGTCGGCCTAGATAATGAAGCCCAAATTGCACEST: gi|71445078|gb|DR826128.1|DR826128
genomic: AGAAGGTCCCATATCTGAAGAGGCGCTTGAGAGAGTCCGTGCACTGTTAGgtgagtcaaa ... ctttttgcagATATGATAAGACCTCTAGATGTCGGCCTAGATAATGAAGCCCAAATTGCAC
EST: AGAAGGTCCCATATCTGAAGAGGCGCTTGAGAGAGTCCGTGCACTGTTAG ATATGATAAGACCTCTAGATGTCGGCCTAGATAATGAAGCCCAAATTGCACEST: gi|213173437|gb|FM193786.1|FM193786
genomic: AGAAGGTCCCATATCTGAAGAGGCGCTTGAGAGAGTCCGTGCACTGTTAGgtgagtcaaa ... ctttttgcagATATGATAAGACCTCTAGATGTCGGCCTAGATAATGAAGCCCAAATTGCAC
EST: AGAAGGTCCCATATCTGAAGAGGCGCTTGAGAGAGTCCGTGCACTGTTAG ATATGATAAGACCTCTAGATGTCGGCCTAGATAATGAAGCCCAAATTGCAC
genomic: AGAAGGTCCCATATCTGAAGAGGCGCTTGAGAGAGTCCGTGCACTGTTAGgtgagtcaaa ... ctttttgcagATATGATAAGACCTCTAGATGTCGGCCTAGATAATGAAGCCCAAATTGCAC
tatgagataagaacattggcatacttaaaaatatgacccctgttcctttttgcagATATGATAAGACCTCTAGATGTCGGCCTAGATAATGAAGCCCAAATTGCACGCAATTGGAGTAGTTCTACGCGTCCATCAAATGGGAGACGAGGACGCAA
cccctgttcctttttg CT-rich tract
atacttaaaaatatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcgctaaactttatttcagttctaacattgagttctgattggttctatgagataagaacattggcatacttaaaaatatgacccctgttcctttttgcagATATGATAAGACCTCTAGATGTCGGCCTAGATAATGAAGCCCAAATTGCACGCAATTGGAGTAGTTCTACGCGTCCATCAAATGGGAGACGAGGACGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG