1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ACCCTATCTAGGAGACGGAGCGGCGGGCCAGCGGCTACGCGGGCAAAGAGAGGACGAGAGCGTGCAAGAAGAGAAGGCCCGTGTCAGGCGGCGGCTATAGgtattggcctcccctgttcctctccttgacgtgtccttagatttggagattgttcgacaagggattgtgtttttgaattagagtattagattagactgac...
species | Zea mays |
transcript | GRMZM2G162175_T04 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGGACGAGAGCGTGCAAGAAGAGAAGGCCCGTGTCAGCCGGCGGCTATAG GTGCAAGGATAGGCAACAAGTGTTCAAAAACACGTCTGTGGATCAATTGACEST: gi|76925183|gb|DV170318.1|DV170318
genomic: AGGACGAGAGCGTGCAAGAAGAGAAGGCCCGTGTCAGGCGGCGGCTATAGgtattggcct ... gtttcggtagGTGCAAGGATAGGCAACAAGTGTTCAAAAACACGTCTGTGGATCAATTGAC
EST: AGGACGAGAGCGTGCAAGAAGAGAAGGCCCGTGTCAGGCGGCGGCTATAG GTGCAAGGATAGGCAACAAGTGTTCAAAAACACGTCTGTGGATCAATTGACEST: gi|149084680|gb|EE174165.2|EE174165
genomic: AGGACGAGAGCGTGCAAGAAGAGAAGGCCCGTGTCAGGCGGCGGCTATAGgtattggcct ... gtttcggtagGTGCAAGGATAGGCAACAAGTGTTCAAAAACACGTCTGTGGATCAATTGAC
EST: AGGACGAGAGCGTGCAAGAAGAGAAGGCCCGTGTCAGGCGGCGGCTATAG GTGCAAGGATAGGCAACAAGTGTTCAAAAACACGTCTGTGGATCAATTGACEST: gi|211239856|gb|FL007408.1|FL007408
genomic: AGGACGAGAGCGTGCAAGAAGAGAAGGCCCGTGTCAGGCGGCGGCTATAGgtattggcct ... gtttcggtagGTGCAAGGATAGGCAACAAGTGTTCAAAAACACGTCTGTGGATCAATTGAC
EST: AGGACGAGAGCGTGCAAGAAGAGAAGGCCCGTGTCAGGCGGCGGCTATAG GTGCAAGGATAGGCAACAAGTGTTCAAAAACACGTCTGTGEST: gi|149096944|gb|EE182743.2|EE182743
genomic: AGGACGAGAGCGTGCAAGAAGAGAAGGCCCGTGTCAGGCGGCGGCTATAGgtattggcct ... gtttcggtagGTGCAAGGATAGGCAACAAGTGTTCAAAAACACGTCTGTG
EST: AGGACGAGAGCGTGCAAGAAGAGAAGGCCCGTGTCAGGCGGCGGCTATAG GTGCAAGGATAGGCAACAAGTGTTCAAAAACACGTCTGTGGATCAATTGACEST: gi|50329441|gb|CO524567.1|CO524567
genomic: AGGACGAGAGCGTGCAAGAAGAGAAGGCCCGTGTCAGGCGGCGGCTATAGgtattggcct ... gtttcggtagGTGCAAGGATAGGCAACAAGTGTTCAAAAACACGTCTGTGGATCAATTGAC
EST: AGGACGAGAGCGTGCAAGAAGAGAAGGCCCGTGTCAGGCGGCGGCTATAG GTGCAAGGATAGGCAACAAGTGTTCAAAAACACGTCTGTGGATCAATTGACEST: gi|149078131|gb|EE166880.2|EE166880
genomic: AGGACGAGAGCGTGCAAGAAGAGAAGGCCCGTGTCAGGCGGCGGCTATAGgtattggcct ... gtttcggtagGTGCAAGGATAGGCAACAAGTGTTCAAAAACACGTCTGTGGATCAATTGAC
EST: AGGACGAGAGCGTGCAAGAAGAGAAGGCCCGTGTCAGGCGGCGGCTATAG GTGCAAGGATAGGCAACAAGTGTTCAAAAACACGTCTGTGGATCAATTGACEST: gi|74240567|gb|DT648481.1|DT648481
genomic: AGGACGAGAGCGTGCAAGAAGAGAAGGCCCGTGTCAGGCGGCGGCTATAGgtattggcct ... gtttcggtagGTGCAAGGATAGGCAACAAGTGTTCAAAAACACGTCTGTGGATCAATTGAC
EST: AGGACGAGAGCGTGCAAGAAGAGAAGGCCCGTGTCAGGCGGCGGCTATAG GTGCAAGGATAGGCAACAAGTGTTCAAAAACACGTCTGTGGATCAATTGACEST: gi|101382866|gb|EB813487.1|EB813487
genomic: AGGACGAGAGCGTGCAAGAAGAGAAGGCCCGTGTCAGGCGGCGGCTATAGgtattggcct ... gtttcggtagGTGCAAGGATAGGCAACAAGTGTTCAAAAACACGTCTGTGGATCAATTGAC
EST: AGGACGAGAGCGTGCAAGAAGAGAAGGCCCGTGTCAGGCGGCGGCTATAG GTGCAAGGATAGGCAACAAGTGTTCAAAAACACGTCTGTGGATCAATTGACEST: gi|76012159|gb|DT939329.1|DT939329
genomic: AGGACGAGAGCGTGCAAGAAGAGAAGGCCCGTGTCAGGCGGCGGCTATAGgtattggcct ... gtttcggtagGTGCAAGGATAGGCAACAAGTGTTCAAAAACACGTCTGTGGATCAATTGAC
EST: AGGACGAGAGCGTGCAAGAAGAGAAGGCCCGTGTCAGGCGGCGGCTATAG GTGCAAGGATAGGCAACAAGTGTTCAAAAACACGTCTGTGGATCAATTGACEST: gi|149013590|gb|EE043059.2|EE043059
genomic: AGGACGAGAGCGTGCAAGAAGAGAAGGCCCGTGTCAGGCGGCGGCTATAGgtattggcct ... gtttcggtagGTGCAAGGATAGGCAACAAGTGTTCAAAAACACGTCTGTGGATCAATTGAC
EST: AGGACGAGAGCGTGCAAGAAGAGAAGGCCCGTGTCAGGCGGCGGCTATAG GTGCAAGGATAGGCAACAAGTGTTCAAAAACACGTCTGTGGATCAATTGACEST: gi|148969813|gb|EE020704.2|EE020704
genomic: AGGACGAGAGCGTGCAAGAAGAGAAGGCCCGTGTCAGGCGGCGGCTATAGgtattggcct ... gtttcggtagGTGCAAGGATAGGCAACAAGTGTTCAAAAACACGTCTGTGGATCAATTGAC
EST: AGGACGAGAGCGTGCAAGAAGAGAAGGCCCGTGTCAGGCGGCGGCTATAG GTGCAAGGATAGGCAACAAGTGTTCAAAAACACGTCTGTGGATCAATTGACEST: gi|78119801|gb|DV538185.1|DV538185
genomic: AGGACGAGAGCGTGCAAGAAGAGAAGGCCCGTGTCAGGCGGCGGCTATAGgtattggcct ... gtttcggtagGTGCAAGGATAGGCAACAAGTGTTCAAAAACACGTCTGTGGATCAATTGAC
EST: AGGACGAGAGCGTGCAAGAAGAGAAGGCCCGTGTCAGGCGGCGGCTATAG GTGCAAGGATAGGCAACAAGTGTTCAAAAACACGTCTGTGGATCAATTGACEST: gi|149110902|gb|EE294399.2|EE294399
genomic: AGGACGAGAGCGTGCAAGAAGAGAAGGCCCGTGTCAGGCGGCGGCTATAGgtattggcct ... gtttcggtagGTGCAAGGATAGGCAACAAGTGTTCAAAAACACGTCTGTGGATCAATTGAC
EST: AGGACGAGAGCGTGCAAGAAGAGAAGGCCCGTGTCAGGCGGCGGCTATAG GTGCAAGGATAGGCAACAAGTGTTCAAAAACACGTCTGTGGATCAATTGACEST: gi|149109833|gb|EE293628.2|EE293628
genomic: AGGACGAGAGCGTGCAAGAAGAGAAGGCCCGTGTCAGGCGGCGGCTATAGgtattggcct ... gtttcggtagGTGCAAGGATAGGCAACAAGTGTTCAAAAACACGTCTGTGGATCAATTGAC
EST: AGGACGAGAGCGTGCAAGAAGAGAAGGCCCGTGTCAGGCGGCGGCTATAG GTGCAAGGATAGGCAACAAGTGTTCAAAAACACGTCTGTGGATCAATTGACEST: gi|31359391|gb|CD443748.1|CD443748
genomic: AGGACGAGAGCGTGCAAGAAGAGAAGGCCCGTGTCAGGCGGCGGCTATAGgtattggcct ... gtttcggtagGTGCAAGGATAGGCAACAAGTGTTCAAAAACACGTCTGTGGATCAATTGAC
EST: AGGACGAGAGCGTGCAAGAAGAGAAGGCCCGTGTCAGGCGGCGGCTATAG GTGCAAGGATAAGCAACAAGTCTTCAAAAACACGTCTGTGGATCAATTGACEST: gi|74243679|gb|DT651593.1|DT651593
genomic: AGGACGAGAGCGTGCAAGAAGAGAAGGCCCGTGTCAGGCGGCGGCTATAGgtattggcct ... gtttcggtagGTGCAAGGATAGGCAACAAGTGTTCAAAAACACGTCTGTGGATCAATTGAC
EST: AGGACGAGAGCGTGCAAGAAGAGAAGGCCCGTGTCAGGCGGCGGCTATAG GTGCAAGGATAGGCAACAAGTGTTCAAAAACACGTCTGTGGATCAATTGACEST: gi|29130093|gb|CB380797.1|CB380797
genomic: AGGACGAGAGCGTGCAAGAAGAGAAGGCCCGTGTCAGGCGGCGGCTATAGgtattggcct ... gtttcggtagGTGCAAGGATAGGCAACAAGTGTTCAAAAACACGTCTGTGGATCAATTGAC
EST: AGGACGAGAGCGTGCAAGAAGAGAAGGNCCGTGTCAGGCGGCGGCTATAG GTGCAAGGATAGGCAACAAGGGTTCAAAAACACGTCTGTGGATCAATTGACEST: gi|148938224|gb|EC882513.2|EC882513
genomic: AGGACGAGAGCGTGCAAGAAGAGAAGGCCCGTGTCAGGCGGCGGCTATAGgtattggcct ... gtttcggtagGTGCAAGGATAGGCAACAAGTGTTCAAAAACACGTCTGTGGATCAATTGAC
EST: AGGACGAGAGCGTGCAAGAAGAGAAGGCCCGTGTCAGGCGGCGGCTATAG GTGCAAGGATAGGCAACAAGTGTTCAAAAACACGTCTGTGGATCAATTGACEST: gi|71445078|gb|DR826128.1|DR826128
genomic: AGGACGAGAGCGTGCAAGAAGAGAAGGCCCGTGTCAGGCGGCGGCTATAGgtattggcct ... gtttcggtagGTGCAAGGATAGGCAACAAGTGTTCAAAAACACGTCTGTGGATCAATTGAC
EST: AGGACGAGAGCGTGCAAGAAGAGAAGGCCCGTGTCAGGCGGCGGCTATAG GTGCAAGGATAGGCAACAAGTGTTCAAAAACACGTCTGTGGATCAATTGAC
genomic: AGGACGAGAGCGTGCAAGAAGAGAAGGCCCGTGTCAGGCGGCGGCTATAGgtattggcct ... gtttcggtagGTGCAAGGATAGGCAACAAGTGTTCAAAAACACGTCTGTGGATCAATTGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCCTATCTAGGAGACGGAGCGGCGGGCCAGCGGCTACGCGGGCAAAGAGAGGACGAGAGCGTGCAAGAAGAGAAGGCCCGTGTCAGGCGGCGGCTATAGgtattggcctcccctgttcctctccttgacgtgtccttagatttggagattgttcgacaagggattgtgtttttgaattagagtattagattagactgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA