1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tatttgtttctgttgtctaaccatgcacatgacctttacaaatatagtactctgtactacttgtcccatgatgtaatggcttacccattgcaatttgcagCAAGGCCAGCCAAGCTTGTTAAAGATTGTGAAATGACTGCTCCAGAGACAACTATTCTTTACCCTAATGCAGGTGGTAACATCCACACTTTCAGAGCCAT
species | Zea mays |
transcript | GRMZM2G162175_T03 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATCTTATGACTGGGTTGACATACCTGATCATCCAATTGATCAATTACAAA CAAGGCCAGCCAAGCTTGTTAAAGATTGTGAAATGACTGCTCCAGAGACAAEST: gi|213173437|gb|FM193786.1|FM193786
genomic: ATCTTATGACTGGGTTGACATACCTGATCATCCAATTGATCAATTACAAAgtgagttctg ... caatttgcagCAAGGCCAGCCAAGCTTGTTAAAGATTGTGAAATGACTGCTCCAGAGACAA
EST: ATCTTATGACTGGGTTGACATACCTGATCATCCAATTGATCAATTACAAA CAAGGCCAGCCAAGCTTGTTAAAGATTGTGAAATGACTGCTCCAGAGACAAEST: gi|91052877|gb|EB163295.1|EB163295
genomic: ATCTTATGACTGGGTTGACATACCTGATCATCCAATTGATCAATTACAAAgtgagttctg ... caatttgcagCAAGGCCAGCCAAGCTTGTTAAAGATTGTGAAATGACTGCTCCAGAGACAA
EST: ATCTTATGACTGGGTTGACATACCTGATCATCCAATTGATCAATTACAAA CAAGGCCAGCCAAGCTTGTTAAAGATTGTGAAATGACTGCTCCAGAGACAAEST: gi|211331596|gb|FL468865.1|FL468865
genomic: ATCTTATGACTGGGTTGACATACCTGATCATCCAATTGATCAATTACAAAgtgagttctg ... caatttgcagCAAGGCCAGCCAAGCTTGTTAAAGATTGTGAAATGACTGCTCCAGAGACAA
EST: ATCTTATGACTGGGTTGACATACCTGWTCATCCAATTGWTCAATTACAAA CAAGGCCAGCCAAGCTTGTTAAAGATTGTGAAATGACTGCTCCAGAGACAAEST: gi|76925182|gb|DV170317.1|DV170317
genomic: ATCTTATGACTGGGTTGACATACCTGATCATCCAATTGATCAATTACAAAgtgagttctg ... caatttgcagCAAGGCCAGCCAAGCTTGTTAAAGATTGTGAAATGACTGCTCCAGAGACAA
EST: ATCTTATGACTGGGTTGACATACCTGATCATCCAATTGATCAATTACAAA CAAGGCCAGCCAAGCTTGTTAAAGATTGTGAAATGACTGCTCCAGAGACAAEST: gi|12971808|gb|BG267668.1|BG267668
genomic: ATCTTATGACTGGGTTGACATACCTGATCATCCAATTGATCAATTACAAAgtgagttctg ... caatttgcagCAAGGCCAGCCAAGCTTGTTAAAGATTGTGAAATGACTGCTCCAGAGACAA
EST: ATCTTATGACTGGGTTGACATACCTGATCATCCAATTGATCAATTACAAA CAAGGCCAGCCAAGCTTGTTAAAGATTGTGAAATGACTGCTCCAGAGACAAEST: gi|29130501|gb|CB381205.1|CB381205
genomic: ATCTTATGACTGGGTTGACATACCTGATCATCCAATTGATCAATTACAAAgtgagttctg ... caatttgcagCAAGGCCAGCCAAGCTTGTTAAAGATTGTGAAATGACTGCTCCAGAGACAA
EST: TCATCCAATTGATCAATTACAAA CAAGGCCAGCCAAGCTTGTTAAAGATTGTGAAATGACTGCTCCCGAGACAAEST: gi|83278650|gb|DV942658.1|DV942658
genomic: TCATCCAATTGATCAATTACAAAgtgagttctg ... caatttgcagCAAGGCCAGCCAAGCTTGTTAAAGATTGTGAAATGACTGCTCCAGAGACAA
EST: ATCTTATGACTGGGTTGACATACCTGATCATCCAATTGATCAATTACAAA CAAGGCCAGCCAAGCTTGTTAAAGATTGTGAAATGACTGCTCCAGAGACAA
genomic: ATCTTATGACTGGGTTGACATACCTGATCATCCAATTGATCAATTACAAAgtgagttctg ... caatttgcagCAAGGCCAGCCAAGCTTGTTAAAGATTGTGAAATGACTGCTCCAGAGACAA
agtactctgtactacttgtcccatgatgtaatggcttacccattgcaatttgcagCAAGGCCAGCCAAGCTTGTTAAAGATTGTGAAATGACTGCTCCAGAGACAACTATTCTTTACCCTAATGCAGGTGGTAACATCCACACTTTCAGAGCCAT
ggcttac putative branch site (score: 93)
atgtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatttgtttctgttgtctaaccatgcacatgacctttacaaatatagtactctgtactacttgtcccatgatgtaatggcttacccattgcaatttgcagCAAGGCCAGCCAAGCTTGTTAAAGATTGTGAAATGACTGCTCCAGAGACAACTATTCTTTACCCTAATGCAGGTGGTAACATCCACACTTTCAGAGCCAT
- - tgtttct
- - - - - - - - - - ccatgca
- - - - - - - - - - - - - -catgacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgta