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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTACGCGTCCATCAAATGGGAGACGAGGACGCAATGGGGCTAACCAGTTCGCGGCTCCAATCAAATATTTGCACATTCATGAATGTGAAAGCTTCTCTgtaagatctcttattcattcattattttatttctatgtttatttgtgtggttttcaggaggacagataaagtggtttctctgtggtattcactgcgttcaggatttactaaatttatgtgattttgcag

Basic information

species Zea mays
transcript GRMZM2G162175_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G162175_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os04g06790.2 (Oryza sativa), 5'ss of exon 4
TTCTACGCGTCCATCAAATGGGAGACGAGGACGCAATGGGGCTAACCAGTTCGCGGCTCCAATCAAATATTTGCACATTCATGAATGTGAAAGCTTCTCTgtaagatctcttattcattcatt------------attttatttctatgtttatttgtgtggttttcaggaggacagataaagtggttt---ctctgtggtattcactgcgttcaggatttactaaatttatgtgattttgcag
||| ||||||| | ||||||| ||| ||||||| |||||||||||||||||| |  |||||||||||||||| |||||||||||| ||||||| ||||||||||||| || |  |||||  ||             |||| | | |    |  | |||  |   ||   |     | |   ||| | |    | ||   || ||  | || |         ||||||||| |     | || ||
TTCAACGCGTCAACCAAATGGAAGAAGAGGACGTAATGGGGCTAACCAGTTCACATCTCCAATCAAATATTTACACATTCATGAAAGTGAAAGTTTCTCTgtaagatatcatcatcatttttttaagatcgtgatgttttttatttgaactgttctgtaagtactttgaggctttaaaattagtagatagaacactcctgtgttt-cagcatctgatgaacactaaatttttcaatatatgtag

upper sequence: GRMZM2G162175_T01 (Zea mays), 5'ss of exon 3
lower sequence: Vv10s0003g01390.t01 (Vitis vinifera), 5'ss of exon 4
TTCTACGCGTCCATCAAATGGGAGACGAGGACGCAATGGGGCTAACCAGTTCGCGGCTCCAATCAAATATTTGCACATTCATGAATGTGAAAGCTTCTCTgtaagatctcttattcattcattattttatttctatgtttatttgtgtggttttcaggaggacagataaagtggtttctctgtggtattcactgcgttcaggatttactaaatttatgtgattttgcag
||| | || |    | ||||||| |  ||  || |||||   | | |||| | || |||||||||||||| ||||| | ||||||||||| || |||||||||||   | || ||   | |||  || |||| | |    |         || || | | |  |  || |    ||  | |  |   |    |||  |     ||| |   ||||              
TTCCATGCATGGTGCCAATGGGAAAAAAGTGCGTAATGGCAGTCATCAGTACCCGCCTCCAATCAAATATCTGCACTTACATGAATGTGACAGATTCTCTgtaagcaatttt-tttgatgatttattaatttttgtaggca-------aattctctgtaagcaatttaca----ttcttttaggacttcagttgctatttaatttttc---attt--------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211037838|gb|FL428696.1|FL428696
EST:     TCGCGGCTCCAATCAAATATTTGCACATTCATGAATGTGAAAGCTTCTCT                         ATGGGTATATTTTGTATGCCACCTTCTTCAGTTATCCCACTTCATAATCAT
genomic: TCGCGGCTCCAATCAAATATTTGCACATTCATGAATGTGAAAGCTTCTCTgtaagatctc ... gattttgcagATGGGTATATTTTGTATGCCACCTTCTTCAGTTATCCCACTTCATAATCAT
EST: gi|110200615|gb|EC882512.1|EC882512
EST:     TCATGAATGTGAAAGCTTCTCT                         ATGGGTATATTTTGTATGCCACCTTCTTCAGTTATCCCACTTCATAATCAT
genomic: TCATGAATGTGAAAGCTTCTCTgtaagatctc ... gattttgcagATGGGTATATTTTGTATGCCACCTTCTTCAGTTATCCCACTTCATAATCAT
EST: gi|213173437|gb|FM193786.1|FM193786
EST:     TCGCGGCTCCAATCAAATATTTGCACATTCATGAATGTGAAAGCTTCTCT                         ATGGGTATATTTTGTATGCCACCTTCTTCAGTTATCCCACTTCATAATCAT
genomic: TCGCGGCTCCAATCAAATATTTGCACATTCATGAATGTGAAAGCTTCTCTgtaagatctc ... gattttgcagATGGGTATATTTTGTATGCCACCTTCTTCAGTTATCCCACTTCATAATCAT
EST: gi|76925182|gb|DV170317.1|DV170317
EST:     TCGCGGCTCCAATCAAATATTTGCACATTCATGAATGTGAAAGCTTCTCT                         ATGGGTATATTTTGTATGCCACCTTCTTCAGTTATCCCACTTCATAATCAT
genomic: TCGCGGCTCCAATCAAATATTTGCACATTCATGAATGTGAAAGCTTCTCTgtaagatctc ... gattttgcagATGGGTATATTTTGTATGCCACCTTCTTCAGTTATCCCACTTCATAATCAT
EST: gi|83278650|gb|DV942658.1|DV942658
EST:     TCGCGGCTCCAATCAAATATTTGCACATTCATGAATGTGAAAGCTTCTCT                         ATGGGTATATTTTGTATGCCACCTTCTTCAGTTATCCCACTTCATAATCAT
genomic: TCGCGGCTCCAATCAAATATTTGCACATTCATGAATGTGAAAGCTTCTCTgtaagatctc ... gattttgcagATGGGTATATTTTGTATGCCACCTTCTTCAGTTATCCCACTTCATAATCAT