1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgaggaactgcctggtgcctgcatcatggccagttaattattgccagcattaaaagtactatgttaacattatttcttgtttattttttcagCAAAAGCTTTGGATGAATATACTGCCATCCAATCAAGGGGCACTGGGGAAGAAAAAACGATCGACCCTAGGCTGGAGGCCATAGTGGAAAGGATGCTGGA
species | Zea mays |
transcript | GRMZM2G159002_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACCCTTGTTTGATGTTTCTGACGACTCTGATTATGCTCAAACACTGTTAG CAAAAGCTTTGGATGAATATACTGCCATCCAATCAAGGGGCACTGGGGAAGEST: gi|149078849|gb|EE167663.2|EE167663
genomic: ACCCTTGTTTGATGTTTCTGACGACTCTGATTATGCTCAAACACTGTTAGgtgaggaact ... attttttcagCAAAAGCTTTGGATGAATATACTGCCATCCAATCAAGGGGCACTGGGGAAG
EST: ACCCTTGTTTGATGTTTCTGACGACTCTGATTATGCTCAAACACTGTTAG CAAAAGCTTTGGATGAATATACTGCCATCCAATCAAGGGGCACTGGGGAAGEST: gi|78083538|gb|DV511931.1|DV511931
genomic: ACCCTTGTTTGATGTTTCTGACGACTCTGATTATGCTCAAACACTGTTAGgtgaggaact ... attttttcagCAAAAGCTTTGGATGAATATACTGCCATCCAATCAAGGGGCACTGGGGAAG
EST: ACCCTTGTTTGATGTTTCTGACGACTCTGATTATGCTCAAACACTGTTAG CAAAAGCTTTGGATGAATATACTGCCATCCAATCAAGGGGCACTGGGGAAGEST: gi|148946605|gb|EC891864.2|EC891864
genomic: ACCCTTGTTTGATGTTTCTGACGACTCTGATTATGCTCAAACACTGTTAGgtgaggaact ... attttttcagCAAAAGCTTTGGATGAATATACTGCCATCCAATCAAGGGGCACTGGGGAAG
EST: ACCCTTGTTTGATGTTTCTGACGACTCTGATTATGCTCAAACACTGTTAG CAAAAGCTTTGGATGAATATACTGCCATCCAATCAAGGGGCACTGGGGAAGEST: gi|149014543|gb|EE044180.2|EE044180
genomic: ACCCTTGTTTGATGTTTCTGACGACTCTGATTATGCTCAAACACTGTTAGgtgaggaact ... attttttcagCAAAAGCTTTGGATGAATATACTGCCATCCAATCAAGGGGCACTGGGGAAG
EST: ACCCTTGTTTGATGTTTCTGACGACTCTGATTATGCTCAAACACTGTTAG CAAAAGCTTTGGATGAATATACTGCCATCCAATCAAGGGGCACTGGGGAAGEST: gi|71449454|gb|DR830504.1|DR830504
genomic: ACCCTTGTTTGATGTTTCTGACGACTCTGATTATGCTCAAACACTGTTAGgtgaggaact ... attttttcagCAAAAGCTTTGGATGAATATACTGCCATCCAATCAAGGGGCACTGGGGAAG
EST: ACCCTTGTTTGATGTTTCTGACGACTCTGATTATGCTCAAACACTGTTAG CAAAAGCTTTGGATGAATATACTGCCATCCAATCAAGGGGCACTGGGGAAGEST: gi|148938539|gb|EC882859.2|EC882859
genomic: ACCCTTGTTTGATGTTTCTGACGACTCTGATTATGCTCAAACACTGTTAGgtgaggaact ... attttttcagCAAAAGCTTTGGATGAATATACTGCCATCCAATCAAGGGGCACTGGGGAAG
EST: ACCCTTGTTTGATGTTTCTGACGACTCTGATTATGCTCAAACACTGTTAG CAAAAGCTTTGGATGAATATACTGCCATCCAATCAAGGGGCACTGGGGAAG
genomic: ACCCTTGTTTGATGTTTCTGACGACTCTGATTATGCTCAAACACTGTTAGgtgaggaact ... attttttcagCAAAAGCTTTGGATGAATATACTGCCATCCAATCAAGGGGCACTGGGGAAG
ttattgccagcattaaaagtactatgttaacattatttcttgtttattttttcagCAAAAGCTTTGGATGAATATACTGCCATCCAATCAAGGGGCACTGGGGAAGAAAAAACGATCGACCCTAGGCTGGAGGCCATAGTGGAAAGGATGCTGGA
tgttaac putative branch site (score: 363)
ttatttcttgtttatt CT-rich tract
tatgttaacattattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaggaactgcctggtgcctgcatcatggccagttaattattgccagcattaaaagtactatgttaacattatttcttgtttattttttcagCAAAAGCTTTGGATGAATATACTGCCATCCAATCAAGGGGCACTGGGGAAGAAAAAACGATCGACCCTAGGCTGGAGGCCATAGTGGAAAGGATGCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA