1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gtcactggttgtaaaaagttttgacaatcagtttgtgcttaggtgctttgctttgtcctgtattcctatttcctcacaatttgttccctgctgcttgcagTGAGAGTTTGTATGAAGACGAGGAGTTTGTCCAGAGGCAACTTGCAGCACTAGTTGCCTCTAAGGTATTTTTCTACTTGGGCGAGCTAAATGATGCTCTG
species | Zea mays |
transcript | GRMZM2G159002_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTCTCGTCCACGCCTTCTGGCACGAGATCTCCACCAGCGTCTCCTCCAT TGAGAGTTTGTATGAAGACGAGGAGTTTGTCCAGAGGCAACTTGCAGCACTEST: gi|149078849|gb|EE167663.2|EE167663
genomic: TCTCTCGTCCACGCCTTCTGGCACGAGATCTCCACCAGCGTCTCCTCCATgtaagtcccc ... ctgcttgcagTGAGAGTTTGTATGAAGACGAGGAGTTTGTCCAGAGGCAACTTGCAGCACT
EST: TCTCTCGTCCACGCCTTCTGGCACGAGATCTCCACCAGCGTCTCCTCCAT TGAGAGTTTGTATGAAGACGAGGAGTTTGTCCAGAGGCAACTTGCAGCACTEST: gi|78083538|gb|DV511931.1|DV511931
genomic: TCTCTCGTCCACGCCTTCTGGCACGAGATCTCCACCAGCGTCTCCTCCATgtaagtcccc ... ctgcttgcagTGAGAGTTTGTATGAAGACGAGGAGTTTGTCCAGAGGCAACTTGCAGCACT
EST: TCTCTCGTCCACGCCTTCTGGCACGAGATCTCCACCAGCGTCTCCTCCAT TGAGAGTTTGTATGAAGACGAGGAGTTTGTCCAGAGGCAACTTGCAGCACTEST: gi|148946605|gb|EC891864.2|EC891864
genomic: TCTCTCGTCCACGCCTTCTGGCACGAGATCTCCACCAGCGTCTCCTCCATgtaagtcccc ... ctgcttgcagTGAGAGTTTGTATGAAGACGAGGAGTTTGTCCAGAGGCAACTTGCAGCACT
EST: TCTCTCGTCCACGCCTTCTGGCACGAGATCTCCACCAGCGTCTCCTCCAT TGAGAGTTTGTATGAAGACGAGGAGTTTGTCCAGAGGCAACTTGCAGCACTEST: gi|149014543|gb|EE044180.2|EE044180
genomic: TCTCTCGTCCACGCCTTCTGGCACGAGATCTCCACCAGCGTCTCCTCCATgtaagtcccc ... ctgcttgcagTGAGAGTTTGTATGAAGACGAGGAGTTTGTCCAGAGGCAACTTGCAGCACT
EST: TCTCTCGTCCACGCCTTCTGGCACGAGATCTCCACCAGCGTCTCCTCCAT TGAGAGTTTGTATGAAGACGAGGAGTTTGTCCAGAGGCAACTTGCAGCACTEST: gi|71449454|gb|DR830504.1|DR830504
genomic: TCTCTCGTCCACGCCTTCTGGCACGAGATCTCCACCAGCGTCTCCTCCATgtaagtcccc ... ctgcttgcagTGAGAGTTTGTATGAAGACGAGGAGTTTGTCCAGAGGCAACTTGCAGCACT
EST: TCTCTCGTCCACGCCTTCTGGCACGAGATCTCCACCAGCGTCTCCTCCAT TGAGAGTTTGTATGAAGACGAGGAGTTTGTCCAGAGGCAACTTGCAGCACTEST: gi|91878457|gb|EB408414.1|EB408414
genomic: TCTCTCGTCCACGCCTTCTGGCACGAGATCTCCACCAGCGTCTCCTCCATgtaagtcccc ... ctgcttgcagTGAGAGTTTGTATGAAGACGAGGAGTTTGTCCAGAGGCAACTTGCAGCACT
EST: TCTCTCGTCCACGCCTTCTGGCACGAGATCTCCACCAGCGTCTCCTCCAT TGAGAGTTTGTCTGAAGACGAGGAGTTTGTCCAGAGGCAACTTGCAGCACTEST: gi|148938539|gb|EC882859.2|EC882859
genomic: TCTCTCGTCCACGCCTTCTGGCACGAGATCTCCACCAGCGTCTCCTCCATgtaagtcccc ... ctgcttgcagTGAGAGTTTGTATGAAGACGAGGAGTTTGTCCAGAGGCAACTTGCAGCACT
EST: TCTCTCGTCCACGCCTTCTGGCACGAGATCTCCACCAGCGTCTCCTCCAT TGAGAGTTTGTATGAAGACGAGGAGTTTGTCCAGAGGCAACTTGCAGCACT
genomic: TCTCTCGTCCACGCCTTCTGGCACGAGATCTCCACCAGCGTCTCCTCCATgtaagtcccc ... ctgcttgcagTGAGAGTTTGTATGAAGACGAGGAGTTTGTCCAGAGGCAACTTGCAGCACT
ctttgctttgtcctgtattcctatttcctcacaatttgttccctgctgcttgcagTGAGAGTTTGTATGAAGACGAGGAGTTTGTCCAGAGGCAACTTGCAGCACTAGTTGCCTCTAAGGTATTTTTCTACTTGGGCGAGCTAAATGATGCTCTG
tcctcac putative branch site (score: 327)
ttccctgct putative PPT
aatttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcactggttgtaaaaagttttgacaatcagtttgtgcttaggtgctttgctttgtcctgtattcctatttcctcacaatttgttccctgctgcttgcagTGAGAGTTTGTATGAAGACGAGGAGTTTGTCCAGAGGCAACTTGCAGCACTAGTTGCCTCTAAGGTATTTTTCTACTTGGGCGAGCTAAATGATGCTCTG
- - ctggttg
- - - - - - - - - - - - - - - - -tgtgctt
- - - - - - - - - - - - - - - - - - - - -ggtgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgtcctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttccctg