1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...accaaagagaactatcacaaacttctattctttgcatctttcagatgtttctttttacaatgtccaccactcatttagtgtgccttgtgttacaaaatagGGACACAGGAAATGGATTACTGCTGTATCATGGGAGCCAGTTCATTTGCAGTCTCCGTGCCGCCGCTTTGTAAGTGCAAGCAAGGACGGTGATGCTCGCA
species | Zea mays |
transcript | GRMZM2G157034_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTATATTATGGGACCCAAAAACTGGGAACCAATTGGGCACTCCACTTATG GGACACAGGAAATGGATTACTGCTGTATCATGGGAGCCAGTTCATTTGCAGEST: gi|50328574|gb|CO523700.1|CO523700
genomic: TTATATTATGGGACCCAAAAACTGGGAACCAATTGGGCACTCCACTTATGgtacaatcat ... tacaaaatagGGACACAGGAAATGGATTACTGCTGTATCATGGGAGCCAGTTCATTTGCAG
EST: TTATATTATGGGACCCAAAAACTGGGAACCAATTGGGCACTCCACTTATG GGACACAGGAAATGGATTACTGCTGTATCATGGGAGCCAGTTCATTTGCAGEST: gi|32930416|gb|CF035228.1|CF035228
genomic: TTATATTATGGGACCCAAAAACTGGGAACCAATTGGGCACTCCACTTATGgtacaatcat ... tacaaaatagGGACACAGGAAATGGATTACTGCTGTATCATGGGAGCCAGTTCATTTGCAG
EST: TTATATTATGGGACCCAAAAACTGGGAACCAATTGGGCACTCCACTTATG GGACACAGGAAATGGATTACTGCTGTATCATGGGAGCCAGTTCATTTGCAGEST: gi|149042078|gb|EE047056.2|EE047056
genomic: TTATATTATGGGACCCAAAAACTGGGAACCAATTGGGCACTCCACTTATGgtacaatcat ... tacaaaatagGGACACAGGAAATGGATTACTGCTGTATCATGGGAGCCAGTTCATTTGCAG
EST: TTATATTATGGGACCCAAAAACTGGGAACCAATTGGGCACTCCACTTATG GGACACAGGAAATGGATTACTGCTGTATCATGGGAGCCAGTTCATTTGCAGEST: gi|148939524|gb|EC884116.2|EC884116
genomic: TTATATTATGGGACCCAAAAACTGGGAACCAATTGGGCACTCCACTTATGgtacaatcat ... tacaaaatagGGACACAGGAAATGGATTACTGCTGTATCATGGGAGCCAGTTCATTTGCAG
EST: TATATTATGGGACCCAAAAACTGGGAACCAATTTGGG-ACTCCACTTATG GGACACAGGAAATGGATTACTGCTGTATCA
genomic: TATATTATGGGACCCAAAAACTGGGAACCAATT-GGGCACTCCACTTATGgtacaatcat ... tacaaaatagGGACACAGGAAATGGATTACTGCTGTATCA
tgtttctttttacaatgtccaccactcatttagtgtgccttgtgttacaaaatagGGACACAGGAAATGGATTACTGCTGTATCATGGGAGCCAGTTCATTTGCAGTCTCCGTGCCGCCGCTTTGTAAGTGCAAGCAAGGACGGTGATGCTCGCA
tttttacaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accaaagagaactatcacaaacttctattctttgcatctttcagatgtttctttttacaatgtccaccactcatttagtgtgccttgtgttacaaaatagGGACACAGGAAATGGATTACTGCTGTATCATGGGAGCCAGTTCATTTGCAGTCTCCGTGCCGCCGCTTTGTAAGTGCAAGCAAGGACGGTGATGCTCGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- caaagaga
- - - - - - -atcacaa
- - - - - - - - - - - - - - -ctttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caccact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgccttg