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gtattattgtgctctaattgttttctttcccatctatccaattctttcatcttatcttgcttccctcaaccttacctttccatcctcctattgttaactcactcgtgcattctattcattcagGAGGAGAAGTTGCCCTATGCATTCTACGTTGGAGACGAGGAGCTCTCTGTCTACCTGGGTGCTTACATGCGGCAGAAGAACG
species | Zea mays |
transcript | GRMZM2G157034_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACGTCGGGCCCCCGCAGCTCCAGGAGATTGTCAATCAGCTCCTCCACAAT GAGGAGAAGTTGCCCTATGCATTCTACGTTGGAGACGAGGAGCTCTCTGTCEST: gi|149042078|gb|EE047056.2|EE047056
genomic: ACGTCGGGCCCCCGCAGCTCCAGGAGATTGTCAATCAGCTCCTCCACAATgtattattgt ... attcattcagGAGGAGAAGTTGCCCTATGCATTCTACGTTGGAGACGAGGAGCTCTCTGTC
EST: ACGTCGGGCCCCCGCAGCTCCAGGAGATTGTCAATCAGCTCCTCCACAAT GAGGAGAAGTTGCCCTATGCATTCTACGTTGGAGACGAGGAGCTCTCTGTCEST: gi|148939524|gb|EC884116.2|EC884116
genomic: ACGTCGGGCCCCCGCAGCTCCAGGAGATTGTCAATCAGCTCCTCCACAATgtattattgt ... attcattcagGAGGAGAAGTTGCCCTATGCATTCTACGTTGGAGACGAGGAGCTCTCTGTC
EST: ACGTCGGGCCCCCGCAGCTCCAGGAGATTGTCAATCAGCTCCTCCACAAT GAGGAGAAGTTGCCCTATGCATTCTACGTTGGAGACGAGGAGCTCTCTGTC
genomic: ACGTCGGGCCCCCGCAGCTCCAGGAGATTGTCAATCAGCTCCTCCACAATgtattattgt ... attcattcagGAGGAGAAGTTGCCCTATGCATTCTACGTTGGAGACGAGGAGCTCTCTGTC
accttacctttccatcctcctattgttaactcactcgtgcattctattcattcagGAGGAGAAGTTGCCCTATGCATTCTACGTTGGAGACGAGGAGCTCTCTGTCTACCTGGGTGCTTACATGCGGCAGAAGAACG
aactcac putative branch site (score: 59)
ttctattc putative PPT
tattgttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattattgtgctctaattgttttctttcccatctatccaattctttcatcttatcttgcttccctcaaccttacctttccatcctcctattgttaactcactcgtgcattctattcattcagGAGGAGAAGTTGCCCTATGCATTCTACGTTGGAGACGAGGAGCTCTCTGTCTACCTGGGTGCTTACATGCGGCAGAAGAACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC