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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcagcatatagattgcggtactgcatccccttgtttgcgaatggaaaacatttgcgctgcattttgtttcattgtctaatagctatttcacggataccagTGCCACAGCTTATGGAATCCTGATCTTCCTGGGTTCGTTATTCGGGGATCTTGTTGAATCTCTGATCAAGCGCGACGCTGGTGTGAAGGACTCCGGATCG

Basic information

species Zea mays
transcript GRMZM2G156983_T05
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G053711_T03 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os02g03460.1 (Oryza sativa), 3'ss of exon 4
-----gcagcatatagattgcggtactgcatccccttgtttgcgaatggaaaacatttgcgctgcattttgtttcattgtctaatagctatttcacggataccagTGCCACAGCTTATGGAATCCTGATCTTCCTGGGTTCGTTATTCGGGGATCTTGTTGAATCTCTGATCAAGCGCGACGCTGGTGTGAAGGACTCCGGATCG
      ||  |  | ||| |  ||  | ||    | ||||  | | | | ||| |||| |    || || ||||   |  ||||   ||||||||| |||| |||||| || ||||| |||||| ||||||| ||||||||||| |||||||||||||| || |||||||||||||| || ||||||||||||||||| ||||| 
tgtgttcaaaactttgatag--gttgttcacttgcatgttcacaagtagcaaatatttccttaacacttggttttgataactaa---ctatttcactgatatcagTGCTACTGCTTACGGAATCTTGATCTTTCTGGGTTCGTTGTTCGGGGATCTTGTCGAGTCTCTGATCAAGCGTGATGCTGGTGTGAAGGACTCTGGATCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaacatttgcgctgcattttgtttcattgtctaatagctatttcacggataccagTGCCACAGCTTATGGAATCCTGATCTTCCTGGGTTCGTTATTCGGGGATCTTGTTGAATCTCTGATCAAGCGCGACGCTGGTGTGAAGGACTCCGGATCG
                            gtctaat  putative branch site (score: 3)
               attttgttt  TA-rich tract