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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTCGTCCGCAGCACTGTAGCCGGAGGCGGGACCCCGCCGCCGCGCTACGTGTCCCGCGTCTGTTCCGCCATCTGCGCTCTCATGCCCATCCTTACGCTgtaagagcatctccaacaacgtgacctataaaaatgccttataatttaaaaataattaaattttgtagaatttagggcaccaacaaaataccccgctcca...

Basic information

species Zea mays
transcript GRMZM2G156983_T05
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G053711_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g03460.1 (Oryza sativa), 5'ss of exon 1
AGCTCGTCCGCAGCACTGTAGCCGGAGGCGGGACCCCGCCGCCGCGCTACGTGTCCCGCGTCTGTTCCGCCATCTGCGCTCTCATGCCCATCCTTACGCTgtaagagcatctccaacaacgtgacctataaaaatgccttataattta--aaaataattaa--attttgtagaatttag-ggcaccaacaaaataccccgctcca
 |||||||||| | || |  | ||| || || || ||||||||||||| ||||||||||||||| || |||||||||||||||||||| |||||||| |||||||     |||   |      ||||| |    |   ||   ||  |      ||  |||  ||||  |  |||  |  ||     |    ||     | |   
GGCTCGTCCGCGGGACCGCCGGCGGGGGAGGCACGCCGCCGCCGCGCTTCGTGTCCCGCGTCTGCTCTGCCATCTGCGCTCTCATGCCTATCCTTACCCTgtaagcaggcctc--gcggttacacctacattggttaatttggatgaactgtgttagctaaccatttgcttcaatcaattggtgttcaattcatgtgtagtt---