1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cttgtttagtaagatatgcaagagattatcgatgtgagaacacaaagcatggaaattctactttatcttttccatttgtgctgatatattttcattttagGGCATACTTACCAACTTATCAATCAAGCACTAAAA
species | Zea mays |
transcript | GRMZM2G156356_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TACTGCCTGGCATAATCTCTGGTTCTTTAGCTGTTGCAGCTGTTGCGATG GGCATACTTACCAACTTATCAATCAAGCACTAEST: gi|31351097|gb|CD435454.1|CD435454
genomic: TACTGCCTGGCATAATCTCTGGTTCTTTAGCTGTTGCAGCTGTTGCGATGgtacgacaca ... ttcattttagGGCATACTTACCAACTTATCAATCAAGCACTA
EST: TACTGCCTGGCATAATCTCTGGTTCTTTAGCTGTTGCAGCTGTTGCGATG GGCATACTTACCAACTTATCAATCAAGCACTAAAA
genomic: TACTGCCTGGCATAATCTCTGGTTCTTTAGCTGTTGCAGCTGTTGCGATGgtacgacaca ... ttcattttagGGCATACTTACCAACTTATCAATCAAGCACTAAAA
agcatggaaattctactttatcttttccatttgtgctgatatattttcattttagGGCATACTTACCAACTTATCAATCAAGCACTAAAA
tgctgat putative branch site (score: 4)
ttttcatttt putative PPT
tgatatattttcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgtttagtaagatatgcaagagattatcgatgtgagaacacaaagcatggaaattctactttatcttttccatttgtgctgatatattttcattttagGGCATACTTACCAACTTATCAATCAAGCACTAAAA
cttgttt
- - - - - - - -atgcaag
- - - - - - - - - - - - - - -cgatgtg
- - - - - - - - - - - - - - - - - - - -acacaaa
- - - - - - - - - - - - - - - - - - - - - - - gcatgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgat