1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgaaaatgactgtttttgctttgacaccttacaacttcagctggttctgctgttttgtacagtgtcgattctaaaattttctttcttctgtttatctctgtttggtgaattgaaaatgcagGTCATGTGGTCAACTTTTGTTCCCTTCATCCCCAATAGCGTACTGCCTGGCATAATCTCTGGTTCTTTAGCTGTTGCAGCTGTTGCGATG
species | Zea mays |
transcript | GRMZM2G156356_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGCTGTGGGAGGATTTCATTACAGTCGGCGGCCTTGCCGTGCTCCCTCAG GTCATGTGGTCAACTTTTGTTCCCTTCATCCCCAATAGCGT-CTTGCCTGGEST: gi|71313561|gb|DR793355.1|DR793355
genomic: TGCTGTGGGAGGATTTCATTACAGTCGGCGGCCTTGCCGTGCTCCCTCAGgtgaaaatga ... gaaaatgcagGTCATGTGGTCAACTTTTGTTCCCTTCATCCCCAATAGCGTACT-GCCTGG
EST: TGCTGTGGGAGGATTTCATTACAGTCGGCGGCCTTGCCGTGCTCCCTCAG GTCATGTGGTCAACTTTTGTTCCCTTCATCCCCAATAGCGTACTGCCTGGCEST: gi|31351097|gb|CD435454.1|CD435454
genomic: TGCTGTGGGAGGATTTCATTACAGTCGGCGGCCTTGCCGTGCTCCCTCAGgtgaaaatga ... gaaaatgcagGTCATGTGGTCAACTTTTGTTCCCTTCATCCCCAATAGCGTACTGCCTGGC
EST: TGCTGTGGGAGGATTTCATTACAGTCGGCGGCCTTGCCGTGCTCCCTCAG GTCATGTGGTCAACTTTTGTTCCCTTCATCCCCAATAGCGTACTGCCTGGC
genomic: TGCTGTGGGAGGATTTCATTACAGTCGGCGGCCTTGCCGTGCTCCCTCAGgtgaaaatga ... gaaaatgcagGTCATGTGGTCAACTTTTGTTCCCTTCATCCCCAATAGCGTACTGCCTGGC
gattctaaaattttctttcttctgtttatctctgtttggtgaattgaaaatgcagGTCATGTGGTCAACTTTTGTTCCCTTCATCCCCAATAGCGTACTGCCTGGCATAATCTCTGGTTCTTTAGCTGTTGCAGCTGTTGCGATG
ttctaaa putative branch site (score: 2)
taaaattttctttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaaaatgactgtttttgctttgacaccttacaacttcagctggttctgctgttttgtacagtgtcgattctaaaattttctttcttctgtttatctctgtttggtgaattgaaaatgcagGTCATGTGGTCAACTTTTGTTCCCTTCATCCCCAATAGCGTACTGCCTGGCATAATCTCTGGTTCTTTAGCTGTTGCAGCTGTTGCGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT