1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atggagttctaattcttgttctatgttgcaactaatatacatatagacatgatttttttggggtatatgcattgcaattaatgccccctcccattcccagATGGACGTTTTTTACTATTACTACCCGAAGCGGCTTGGCCAAGTTCTTTTTGTCGATGCTCCATTTGTTTTTCAACCAATGTGGCAGGTTGTTAAACCTC
species | Zea mays |
transcript | GRMZM2G156218_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGCGAGGCTTTCGGGTTGAAAATGGTGATCTCCAGTTCCTAAAGTTTTTG ATGGACGTTTTTTACTATTACTACCCGAAGCGGCTTGGCCAAGTTCTTTTTEST: gi|148937334|gb|EC881515.2|EC881515
genomic: TGCGAGGCTTTCGGGTTGAAAATGGTGATCTCCAGTTCCTAAAGTTTTTGgtgagtttgg ... ccattcccagATGGACGTTTTTTACTATTACTACCCGAAGCGGCTTGGCCAAGTTCTTTTT
EST: TGCGAGGCTTTCGGGTTGAAAATGGTGATCTCCAGTTCCTAAAGTTTTTG ATGGACGTTTTTTACTATTACTACCCGAAGCGGCTTGGCCAAGTTCTTTTTEST: gi|71438317|gb|DR819367.1|DR819367
genomic: TGCGAGGCTTTCGGGTTGAAAATGGTGATCTCCAGTTCCTAAAGTTTTTGgtgagtttgg ... ccattcccagATGGACGTTTTTTACTATTACTACCCGAAGCGGCTTGGCCAAGTTCTTTTT
EST: TGCGAGGCTTTCGGGTTGAAAATGGTGATCTCCAGTTCCTAAAGTTTTTG ATGGACGTTTTTTACTATTACTACCCGAAGCGGCTTGGCCAAGTTCTTTTT
genomic: TGCGAGGCTTTCGGGTTGAAAATGGTGATCTCCAGTTCCTAAAGTTTTTGgtgagtttgg ... ccattcccagATGGACGTTTTTTACTATTACTACCCGAAGCGGCTTGGCCAAGTTCTTTTT
gacatgatttttttggggtatatgcattgcaattaatgccccctcccattcccagATGGACGTTTTTTACTATTACTACCCGAAGCGGCTTGGCCAAGTTCTTTTTGTCGATGCTCCATTTGTTTTTCAACCAATGTGGCAGGTTGTTAAACCTC
aattaat putative branch site (score: 123)
tgccccctcccattcc CT-rich tract
attttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atggagttctaattcttgttctatgttgcaactaatatacatatagacatgatttttttggggtatatgcattgcaattaatgccccctcccattcccagATGGACGTTTTTTACTATTACTACCCGAAGCGGCTTGGCCAAGTTCTTTTTGTCGATGCTCCATTTGTTTTTCAACCAATGTGGCAGGTTGTTAAACCTC
- - - - - -attcttg
- - - - - - - - - - - -tgttgca
- - - - - - - - - - - - - - - - - - - - - - - -catgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgcatt