1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGGCAGGAACGGGAGGGACGATGACGACATGGTCCTCTGGTTCCTAAAGGACCGCAAGTTCTCCGTCGATGAAGCCGTCTCCAAGCTCACCAAGGCGATCgtatcctctaattcactcgtaccagtgaagctcacacctaatagcttctttactcgctcaataatttcctggtatttttttgacgaaggggcgaagcccc...
species | Zea mays |
transcript | GRMZM2G156218_T01 |
intron # | 2 |
splice site | 5' |
intron type | U12 (go to U12 genes for details) |
EST: ACCGCAAGTTCTCCGTCGATGAAGCCGTCTCCAAGCTCACCAAGGCGATC AAATGGCGTCATGACTTTGGTGTTGCAGAGTTATCAGAGGAATCAGTGAAAEST: gi|148937334|gb|EC881515.2|EC881515
genomic: ACCGCAAGTTCTCCGTCGATGAAGCCGTCTCCAAGCTCACCAAGGCGATCgtatcctcta ... actgcattagAAATGGCGTTAGGACTTTGGTGTTGCAGAGTTATCAGAGGAATCAGTGAAA
EST: ACCGCAAGTTCTCCGTCGATGAAGCCGTCTCCAAGCTCACCAAGGCGATC AAATGGCGTTAGGACTTTGGTGTTGCAGAGTTATCAGAGGAATCAGTGAAAEST: gi|211253175|gb|FL345473.1|FL345473
genomic: ACCGCAAGTTCTCCGTCGATGAAGCCGTCTCCAAGCTCACCAAGGCGATCgtatcctcta ... actgcattagAAATGGCGTTAGGACTTTGGTGTTGCAGAGTTATCAGAGGAATCAGTGAAA
EST: ACCGCAAGTTCTCCGTCGATGAAGCCGTCTCCAAGCTCACCAAGGCGATC AAATGGCGTCATGACTTTGGTGTTGCAGAGTTATCAGAGGAATCAGTGAAAEST: gi|71438317|gb|DR819367.1|DR819367
genomic: ACCGCAAGTTCTCCGTCGATGAAGCCGTCTCCAAGCTCACCAAGGCGATCgtatcctcta ... actgcattagAAATGGCGTTAGGACTTTGGTGTTGCAGAGTTATCAGAGGAATCAGTGAAA
EST: ACCGCAAGTTCTCCGTCGATGAAGCCGTCTCCAAGCTCACCAAGGCGATC AAATGGCGTTAGGACTTTGGTGTTGCAGAGTTATCAGAGGAATCAGTGAAA
genomic: ACCGCAAGTTCTCCGTCGATGAAGCCGTCTCCAAGCTCACCAAGGCGATCgtatcctcta ... actgcattagAAATGGCGTTAGGACTTTGGTGTTGCAGAGTTATCAGAGGAATCAGTGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGCAGGAACGGGAGGGACGATGACGACATGGTCCTCTGGTTCCTAAAGGACCGCAAGTTCTCCGTCGATGAAGCCGTCTCCAAGCTCACCAAGGCGATCgtatcctctaattcactcgtaccagtgaagctcacacctaatagcttctttactcgctcaataatttcctggtatttttttgacgaaggggcgaagcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA