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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGGAGGCGCCACCGGACATGCAGTGCAAGGACAAGTTTCTTGTGCAAAGTGTCGTTGTGGCGGAAGGGACCTTAGTCAAGGACATCACTGGCGATATGgtaaatgttgtgatctctgtgaaaattttctgccagatgttttgtttccgaaatgcttgaggttgtaccttgtgcag

Basic information

species Zea mays
transcript GRMZM2G155543_T04
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G155543_T04 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os04g45190.1 (Oryza sativa), 5'ss of exon 4
AAAGGAGGCGCCACCGGACATGCAGTGCAAGGACAAGTTTCTTGTGCAAAGTGTCGTTGTGGCGGAAGGGACCTTAGTCAAGGACATCACTGGCGATATGgtaa---atgttgtgatctctgtgaaa------attttc--------tgccagatgttttgtttccga------aatgcttgaggttgtaccttgtgcag---------
|  |||||| ||| | |||||||||||||| ||||||||||| ||||| || || || ||| | ||||| ||   |  ||||||  ||||||| || ||||||    ||||| | || ||| | | |      ||| |         |||  ||||||| |||||  |      | | | |  | |   | | |||| |          
ACGGGAGGCACCAGCAGACATGCAGTGCAAAGACAAGTTTCTAGTGCAGAGCGTTGTGGTGACTGAAGGCACAACAACCAAGGATGTCACTGGAGAGATGgtagttcatgttctaatgtctatcagatggttgattcttgattatgttgcttgatgttt-gtttctaacttcctagttcctatgatgccaacatgtgtaccttttctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74240612|gb|DT648526.1|DT648526
EST:     GGAAGGGACATTAGTCAAGGACATCACTGGCGATATG                         TTTACCAAAGAATCAGCTAATGTGGTGGATGAGGTTAAGCTGAAGGTCGTC
genomic: GGAAGGGACCTTAGTCAAGGACATCACTGGCGATATGgtaaatgttg ... ccttgtgcagTTTACCAAAGAATCAGCTAATGTGGTGGATGAGGTTAAGCTGAAGGTCGTC
EST: gi|60396382|gb|DN229251.1|DN229251
EST:     AGGGACCTTAGTCAAGGACATCACTGGCGATATG                         TTTACCAAAGAATCAGCTAATGTGGTGGATGAGGTTAAGCTGAAGGTCGTC
genomic: AGGGACCTTAGTCAAGGACATCACTGGCGATATGgtaaatgttg ... ccttgtgcagTTTACCAAAGAATCAGCTAATGTGGTGGATGAGGTTAAGCTGAAGGTCGTC