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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATTTTGAGTCCGACAGGTTAAGACGACGAGCCCGAAGAAGTACTGTGTCCGGCCCAACAGCGGCATCGTGCCACCTCGGTCCACCAGCGATGTCATTGgtaattccaacagaccaacactcacctccttccctccaagttcatttgacatgggcgtccccaagattactatcattcaaatgcctgacgccctttgcaatttctcag

Basic information

species Zea mays
transcript GRMZM2G155543_T04
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G155543_T04 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os04g45190.1 (Oryza sativa), 5'ss of exon 3
TGATTTTGAGTCCGACAGGTTAAGACGACGAGCCCGAAGAAGTACTGTGTCCGGCCCAACAGCGGCATCGTGCCACCTCGGTCCACCAGCGATGTCATTGgtaattccaacagaccaacactcacctccttccctccaagttcatttgacatgggcgtccccaagattactatcattcaaatgcctgac-gccctttgcaatttctcag
                  || ||||| || ||||| ||||||||||| ||| |||| ||||| ||||| ||||| || |||||||||||||||||||| ||| || |        |||  |||| |||||||   | ||     |  || ||   | ||  |  | |  || |  | ||||    |||| |  || |||| || || ||
------------------GTCAAGACAACTAGCCCAAAGAAGTACTGCGTCAGGCCGAACAGTGGCATTGTGCCGCCACGGTCCACCAGCGATGTCATCGgttatgct-------caattctcatctccttcatgcaaaacgt-tgggatattttcctcgtcctgttatctgt-gtgcaaaaaattgacagttctctgcatttccttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71303119|gb|DR787665.1|DR787665
EST:     CCGGCCCAACAGCGGCATCGTGCCACCTCGGTCCACCAGCGATGTCATTG                         TGACAATGCAAGCACAAAAGGAGGGCGCCACCGGACATGCAGTGCAAGGAC
genomic: CCGGCCCAACAGCGGCATCGTGCCACCTCGGTCCACCAGCGATGTCATTGgtaattccaa ... aatttctcagTGACAATGCAAGCACAAAAGGAGG-CGCCACCGGACATGCAGTGCAAGGAC