1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CGGAACGCGCTCCACCTGGCCGCGGAGATGGGCCGTCTTGAGGTTTGCAGGTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAGgtgctgccgctgccattgctggaatcttgcgccttgggggaggcaggacggtgccaagtactatcaggcagcgttctgtcactgagattctacccttgtattattgtgtaatag
species | Zea mays |
transcript | GRMZM2G155314_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAG GCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGGEST: gi|78083174|gb|DV511567.1|DV511567
genomic: GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAGgtgctgccgc ... tgtgtaatagGCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGG
EST: GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAG GCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGGEST: gi|74245146|gb|DT653060.1|DT653060
genomic: GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAGgtgctgccgc ... tgtgtaatagGCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGG
EST: GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAG GCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGGEST: gi|211123343|gb|FL425266.1|FL425266
genomic: GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAGgtgctgccgc ... tgtgtaatagGCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGG
EST: GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAG GCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGGEST: gi|91873915|gb|EB403872.1|EB403872
genomic: GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAGgtgctgccgc ... tgtgtaatagGCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGG
EST: GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAG GCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGGEST: gi|71772874|gb|DR970797.1|DR970797
genomic: GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAGgtgctgccgc ... tgtgtaatagGCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGG
EST: GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAG GCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGGEST: gi|5499093|gb|AI854960.1|AI854960
genomic: GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAGgtgctgccgc ... tgtgtaatagGCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGG
EST: GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAG GCGGGTTGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGGEST: gi|78118021|gb|DV536408.1|DV536408
genomic: GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAGgtgctgccgc ... tgtgtaatagGCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGG
EST: GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAG GCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGGEST: gi|91048309|gb|EB158727.1|EB158727
genomic: GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAGgtgctgccgc ... tgtgtaatagGCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGG
EST: GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAG GCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGGEST: gi|76012307|gb|DT939477.1|DT939477
genomic: GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAGgtgctgccgc ... tgtgtaatagGCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGG
EST: GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAG GCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGGEST: gi|78107760|gb|DV526178.1|DV526178
genomic: GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAGgtgctgccgc ... tgtgtaatagGCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGG
EST: GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAG GCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGGEST: gi|211116198|gb|FL414284.1|FL414284
genomic: GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAGgtgctgccgc ... tgtgtaatagGCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGG
EST: GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAG GCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGARAGCGTCTTGGEST: gi|74242116|gb|DT650030.1|DT650030
genomic: GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAGgtgctgccgc ... tgtgtaatagGCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGG
EST: GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAG GCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGGEST: gi|93283808|gb|EB676072.1|EB676072
genomic: GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAGgtgctgccgc ... tgtgtaatagGCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGG
EST: GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAG GCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGGEST: gi|67031456|gb|CO460205.1|CO460205
genomic: GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAGgtgctgccgc ... tgtgtaatagGCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGG
EST: GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAG GCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGGEST: gi|91870178|gb|EB400743.1|EB400743
genomic: GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAGgtgctgccgc ... tgtgtaatagGCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGG
EST: GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAG GCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGG
genomic: GTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAGgtgctgccgc ... tgtgtaatagGCGGGTCGCCGGTCCACTGCGCCGCGGCCGGGGGCAGCGAGAGCGTCTTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGAACGCGCTCCACCTGGCCGCGGAGATGGGCCGTCTTGAGGTTTGCAGGTTCCTGGTGGAGGAATCGGGCTTCGAGGTGAACTTCGCCTGCGCCGAAGgtgctgccgctgccattgctggaatcttgcgccttgggggaggcaggacggtgccaagtactatcaggcagcgttctgtcactgagattctacccttgtattattgtgtaatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA