Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cgcaattcaccaaaattttcgttctttcttgtagaaagaaatatgccattagtttctgtaattgtttttactacctttaactggcgtcgcttgctaatagATAGTGGAAGCTAATGCAAGGAAGGTGGGCAAAGTTCTATTCAAGCCAATAAGCAGTGAATGTGTTGATGTCGACAACAAGGGTGTGAACCGCCTCATTT

Basic information

species Zea mays
transcript GRMZM2G153928_T03
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G153928_T03 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os03g39640.2 (Oryza sativa), 3'ss of exon 13
-------cgca-attcaccaaaattttcgttctttcttgtagaaagaaatatgccat-tagtttctgtaattgtttttactacctttaactggcgtcgcttgctaatagATAGTGGAAGCTAATGCAAGGAAGGTGGGCAAAGTTCTATTCAAGCCAATAAGCAGTGAATGTGTTGATGTCGACAACAAGGGTGTGAACCGCCTCATTT
          |  || |  ||| |   ||   |    | |  |  ||   | |   | || ||| ||| |   ||| ||  | ||    ||||| || |||||    ||||| | || ||||||||||| ||||| |||||||| |  ||||||||||| ||||| |||||||| ||||| |||| ||||||||| |||||  | ||||
acggtcaaatatgtttaaaaaagtcaacgacgtcaaatatttagggacggagggagtataatttttgtcaccttttctaa-atct----ctggcctcccttgc----agATACTAGAGGCTAATGCAAGAAAGGTTGGCAAAGTCCGTTTCAAGCCAATTAGCAGCGAATGTGTAGATGTTGACAGCAAGGGTGTTAACCGGATGATTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


Nothing found























 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccattagtttctgtaattgtttttactacctttaactggcgtcgcttgctaatagATAGTGGAAGCTAATGCAAGGAAGGTGGGCAAAGTTCTATTCAAGCCAATAAGCAGTGAATGTGTTGATGTCGACAACAAGGGTGTGAACCGCCTCATTT
                             ctttaac  putative branch site (score: 3)
             taattgtttttacta  TA-rich tract