Sequence
atgc intronic sequence ATGC exonic sequenceATTTAACATTAGAAGACGTAGTGGAAGAAATAGTTGGTGAAATCTTCGATGAGAATGATTCCAAGgtgattatttctggaattttttgtttaaaatattgcaaatgggtgttcagtgctgttagtcagttttggtagctagaatcagggctagacatatgattac...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G153928_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g39640.2 (Oryza sativa), 5'ss of exon 11
ATT-TAACATTAGAAGACGTAGTGGAAGAAATAGTTGGTGAAATCTTCGATGAGAATGATTCCAAGgt-gattatttctg-gaattttttgtttaaaatattgcaaatgggtgttcagtgctgttagtcagttttggtagctagaatcagggctagacatatgattac
||| ||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||| ||||| | |||||| | | ||||| || |||| || ||| | | || | ||| || || ||| | ||| | || | || ||
ATTGTAACATTAGAAGATGTTGTGGAAGAAATAGTTGGAGAAATCTTCGATGAGAATGATTCAAAGgttggctatttcagtggtccttttgatttaaattttacaattcagagtctaatgccatttaccacacgctgta--tggaagtgatatttgatttctgctttt
upper sequence: GRMZM2G153928_T03 (Zea mays), 5'ss of exon 4
lower sequence: Vv19s0090g01820.t01 (Vitis vinifera), 5'ss of exon 11
ATT-TAACATTAGAAGACGTAGTGGAAGAAATAGTTGGTGAAATCTTCGATGAGAATGATTCCAAGgtgattatttctggaattttttgtttaaaatattgcaaatgggtgttcagtgctgttagtcagttttggtagctagaatcagggctagacatatgattac
|| |||| | ||||| || || || ||||| || |||||||||||||||||||||||||| || || | | || | | ||| | | || | | | | | | || | | | | | || | ||| | | |
ATAGTAACCCTGGAAGATGTGGTTGAGGAAATTGTCGGTGAAATCTTCGATGAGAATGATTCAAAAgtaaagctccctttatatcttttggaactttgtttttggtattttatgacattcataattcctctctcatgaatggttccacgtttagtggtggaagtgg
upper sequence: GRMZM2G153928_T03 (Zea mays), 5'ss of exon 4
lower sequence: PP1S58_81V6.1 (Physcomitrella patens), 5'ss of exon 14
-ATTTAACATTAGAAGACGTAGTGGAAGAAATAGTTGGTGAAATCTTCGATGAGAATGATTCCAAGgt-gattatttctggaattttttgtttaaaatattgcaaatgggtgttcagtgctgttagtcag--ttttggtagctagaatcagggctagacatatgattac--------------------------------------------------------------------------------------
| | ||||| |||||||| || |||||||| ||||||||||| || ||||| |||||||| ||||| | | ||||| ||| |||||| | |||| || ||| | || || || | || | ||| ||| | | || | | |
GTTGTGACATTGGAAGACGTTGTTGAAGAAATTGTTGGTGAAATTTTTGATGAAAATGATTCGAAGgttggtgatttcgtttattcaatgtttattct-ttgctgtgggaatttcttttctatttgtttggattctcatagagcatttcatgagctgtcaggttaagagagcactggagagttttcatacagaaacttgtatatttttttatattgcgttacatcaccaggcggtgcttggcattttgaatgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|60400445|gb|DN233252.1|DN233252EST: ACGTAGTGGAAGAAATAGTTGGTGAAATCTTCGATGAGAATGATTCCAAG GAGGAAATCCAGAAGAAAACAGGCTATATAGTAAGGCGGGGGGATGGAACA
genomic: ACGTAGTGGAAGAAATAGTTGGTGAAATCTTCGATGAGAATGATTCCAAGgtgattattt ... accctttcagGAGGAAATCCAGAAGAAAACAGGCTATATAGTAAGGCGGGGGGATGGAACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTTAACATTAGAAGACGTAGTGGAAGAAATAGTTGGTGAAATCTTCGATGAGAATGATTCCAAGgtgattatttctggaattttttgtttaaaatattgcaaatgggtgttcagtgctgttagtcagttttggtagctagaatcagggctagacatatgattac
- - - - - - - - - AGTGGA
- - - - - - - - - - TGGAAG
- - - - - - - - - - - GGAAGA
- - - - - - - - - - - - AAGAAA