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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cgcaattcaccaaaattttcgttctttcttgtagaaagaaatatgccattagtttctgtaattgtttttactacctttaactggcgtcgcttgctaatagATAGTGGAAGCTAATGCAAGGAAGGTGGGCAAAGTTCTATTCAAGCCAATAAGCAGTGAATGTGTTGATGTCGACAACAAGGGTGTGAACCGCCTCATTT

Basic information

species Zea mays
transcript GRMZM2G153928_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G153928_T03 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os03g39640.2 (Oryza sativa), 3'ss of exon 13
-------cgca-attcaccaaaattttcgttctttcttgtagaaagaaatatgccat-tagtttctgtaattgtttttactacctttaactggcgtcgcttgctaatagATAGTGGAAGCTAATGCAAGGAAGGTGGGCAAAGTTCTATTCAAGCCAATAAGCAGTGAATGTGTTGATGTCGACAACAAGGGTGTGAACCGCCTCATTT
          |  || |  ||| |   ||   |    | |  |  ||   | |   | || ||| ||| |   ||| ||  | ||    ||||| || |||||    ||||| | || ||||||||||| ||||| |||||||| |  ||||||||||| ||||| |||||||| ||||| |||| ||||||||| |||||  | ||||
acggtcaaatatgtttaaaaaagtcaacgacgtcaaatatttagggacggagggagtataatttttgtcaccttttctaa-atct----ctggcctcccttgc----agATACTAGAGGCTAATGCAAGAAAGGTTGGCAAAGTCCGTTTCAAGCCAATTAGCAGCGAATGTGTAGATGTTGACAGCAAGGGTGTTAACCGGATGATTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87155760|gb|DY400549.1|DY400549
EST:     GTCCTGATCGCCAAGATGATAGAGAAAAAACTCAAGCTTATGAACTCGAG                         ATAGTGGAAGCTAATGCAAGGAAGGTGGGCAAAGTTCTATTCAAGCCAATA
genomic: GTCCTGATCGCCAAGATGATAGAGAAAAAACTCAAGCTTATGAACTCGAGgtaattgtta ... ttgctaatagATAGTGGAAGCTAATGCAAGGAAGGTGGGCAAAGTTCTATTCAAGCCAATA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccattagtttctgtaattgtttttactacctttaactggcgtcgcttgctaatagATAGTGGAAGCTAATGCAAGGAAGGTGGGCAAAGTTCTATTCAAGCCAATAAGCAGTGAATGTGTTGATGTCGACAACAAGGGTGTGAACCGCCTCATTT
                             ctttaac  putative branch site (score: 3)
             taattgtttttacta  TA-rich tract