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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGCAAAGGCGTACGCTCAAGAGAATGGTCTCTTCTTCATGGAAACTTCTGCCAAAACAGCTACCAATGTGAACGACGTGTTCTATGAGATTGgtgagtaactagcatttaaacacacagacagtgtgctgctgctcaatcatttacccactgtcactattgcatcctcatttcag

Basic information

species Zea mays
transcript GRMZM2G151015_T03
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G151015_T03 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os12g43550.2 (Oryza sativa), 5'ss of exon 6
GAAGCAAAGGCGTACGCTCAAGAGAATGGTCTCTTCTTCATGGAAACTTCTGCCAAAACAGCTACCAATGTGAACGACGTGTTCTATGAGATTGgtgagtaactagcatttaaacacacagacagtgtgctgctgctcaatcatttacccactgtcactattgcatcctcatttcag---------------------------------------------------------
|| |||||| | ||||| ||||||||||| || |||||||||||||| ||||| ||||| || | |||||||||||| || ||| | ||||| |||||||    | ||   || ||      |||||   | |||  |    |   | |   | |   ||||   |   ||     |                                                         
GAGGCAAAGACCTACGCACAAGAGAATGGCCTTTTCTTCATGGAAACATCTGCGAAAACGGCGATCAATGTGAACGATGTATTCCACGAGATCGgtgagtttagatcaca-aatcatttccgcagtggatttctgtacgccgacagagctggt-tggttatttggtgtacaaaaatgtacacagcctgcttctgctaatttctaagcgaatttgcattcttaatctgatttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32861166|gb|CF000848.1|CF000848
EST:     AACTTCTGCCAAAACAGCTACCAATGTGAACGACGTGTTCTATGAGATTG                         CGAAGAAACTGCTTCAAGGGCAGCAGGTTCAGAACCCACAAGGCGGGATGG
genomic: AACTTCTGCCAAAACAGCTACCAATGTGAACGACGTGTTCTATGAGATTGgtgagtaact ... ctcatttcagCGAAGAAACTGCTTCAATGGCAGCAGGTTCAGAACCCACAAGGCGGGATGG