Sequence
atgc intronic sequence ATGC exonic sequence...atgatagcagcaatgtttttttgtcttcctctcgtttgattgtgatggtgtctactgaaccaaaacaaaatacattaggtaacattatcctatgctgcagGAAGCAAAGGCGTACGCTCAAGAGAATGGTCTCTTCTTCATGGAAACTTCTGCCAAAACAGCTACCAATGTGAACGACGTGTTCTATGAGATTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G151015_T03 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os12g43550.2 (Oryza sativa), 3'ss of exon 5
atgatagcagcaatgtttttttgtcttcctctcgtttgattgtgatggtgtctactga--accaaaacaaaatacattaggtaacattatcc-tatgctgcagGAAGCAAAGGCGTACGCTCAAGAGAATGGTCTCTTCTTCATGGAAACTTCTGCCAAAACAGCTACCAATGTGAACGACGTGTTCTATGAGATTG
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--ggcactatcc-tgttcttgaaatgaatttcttttccattatgacagcctctgcggcttgctttgttgatgcttatcaaaagctctaatttgtatggtgcagGAGGCAAAGACCTACGCACAAGAGAATGGCCTTTTCTTCATGGAAACATCTGCGAAAACGGCGATCAATGTGAACGATGTATTCCACGAGATCG
upper sequence: GRMZM2G151015_T03 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os12g43550.1 (Oryza sativa), 3'ss of exon 5
atgatagcagcaatgtttttttgtcttcctctcgtttgattgtgatggtgtctactg--aaccaaaacaaaatacattaggtaacattatcc-tatgctgcagGAAGCAAAGGCGTACGCTCAAGAGAATGGTCTCTTCTTCATGGAAACTTCTGCCAAAACAGCTACCAATGTGAACGACGTGTTCTATGAGATTG------
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--ggcactatcc-tgttcttgaaatgaatttcttttccattatgacagcctctgcggcttgctttgttgatgcttatcaaaagctctaatttgtatggtgcagGAGGCAAAGACCTACGCACAAGAGAATGGCCTTTTCTTCATGGAAACATCTGCGAAAACGGCGATCAATGTGAACGATGTATTCCACGAGATCGGTGAGTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32861166|gb|CF000848.1|CF000848EST: TTGCCGGGAACAAGGCTGATTTGTTAGATACGAGGCAGGTGTCAGCAGAT GAAGCAAAGGCGTATGCTCAAGAGAATGGTCTCTTCTTCATGGAAACTTCT
genomic: TTGCTGGGAACAAGGCTGATTTGTTAGATACGAGGCAGGTGTCAGCAGATgtatgttaat ... tatgctgcagGAAGCAAAGGCGTACGCTCAAGAGAATGGTCTCTTCTTCATGGAAACTTCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tggtgtctactgaaccaaaacaaaatacattaggtaacattatcctatgctgcagGAAGCAAAGGCGTACGCTCAAGAGAATGGTCTCTTCTTCATGGAAACTTCTGCCAAAACAGCTACCAATGTGAACGACGTGTTCTATGAGATTG
aggtaac putative branch site (score: 3)
ttatcct CT-rich tract
aaaacaaaatacatta TA-rich tract