1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaataacacagcaagctaactcttcccctgatgtcctgttctccatttgttgtgtatatgctttgttgaaactttttcctatatgagaaattaagccctaataggaatggtggctaatgaccctctgttttgttgctgcccccagCCCTATGCATCTTCTGCCTCTACATGTTTGCACAAAGCACCGATCTGTTTGATCAGCTCCCTTCTTGGGTCCCTGTGGGTAGGGATTCTTTGGGCGGTAC
species | Zea mays |
transcript | GRMZM2G149894_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCTAGCAGCTTTGGGAAGGGTGGTGTCAGGCGCTGCCGTTGCGTATGCTG CCCTATGCATCTTCTGCCTCTACATGTTTGCACAAAGCACCGATCTGTTTGEST: gi|60399421|gb|DN232233.1|DN232233
genomic: TCTAGCAGCTTTGGGAAGGGTGGTGTCAGGCGCTGCCGTTGCGTATGCTGgtaataacac ... ctgcccccagCCCTATGCATCTTCTGCCTCTACATGTTTGCACAAAGCACCGATCTGTTTG
EST: TCTAGCAGCTTTGGGAAGGGTGGTGTCAGGCGCTGCCGTTGCGTATGCTG CCCTATGCATCTTCTGCCTCTACATGTTTGCACAAAGCACCGATCTGTTTGEST: gi|113636242|gb|DW797698.1|DW797698
genomic: TCTAGCAGCTTTGGGAAGGGTGGTGTCAGGCGCTGCCGTTGCGTATGCTGgtaataacac ... ctgcccccagCCCTATGCATCTTCTGCCTCTACATGTTTGCACAAAGCACCGATCTGTTTG
EST: CTTTGGGAAGGGTGGTGTCAGGCGCTGCCGTTGCGTATGCTG CCCTATGCATCTTCTGCCTCTACATGTTTGCACAAAGCACCGATCTGTTTGEST: gi|60341125|gb|DN208098.1|DN208098
genomic: CTTTGGGAAGGGTGGTGTCAGGCGCTGCCGTTGCGTATGCTGgtaataacac ... ctgcccccagCCCTATGCATCTTCTGCCTCTACATGTTTGCACAAAGCACCGATCTGTTTG
EST: TCTAGCAGCTTTGGGAAGGGTGGTGTCAGGCGCTGCCGTTGCGTATGCTG CCCTATGCATCTTCTGCCTCTACATGTTTGCACAAAGCACCGATCTGTTTG
genomic: TCTAGCAGCTTTGGGAAGGGTGGTGTCAGGCGCTGCCGTTGCGTATGCTGgtaataacac ... ctgcccccagCCCTATGCATCTTCTGCCTCTACATGTTTGCACAAAGCACCGATCTGTTTG
ttaagccctaataggaatggtggctaatgaccctctgttttgttgctgcccccagCCCTATGCATCTTCTGCCTCTACATGTTTGCACAAAGCACCGATCTGTTTGATCAGCTCCCTTCTTGGGTCCCTGTGGGTAGGGATTCTTTGGGCGGTAC
ggctaat putative branch site (score: 103)
ctgccccc putative PPT
ttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataacacagcaagctaactcttcccctgatgtcctgttctccatttgttgtgtatatgctttgttgaaactttttcctatatgagaaattaagccctaataggaatggtggctaatgaccctctgttttgttgctgcccccagCCCTATGCATCTTCTGCCTCTACATGTTTGCACAAAGCACCGATCTGTTTGATCAGCTCCCTTCTTGGGTCCCTGTGGGTAGGGATTCTTTGGGCGGTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC