1 5' 3' | 2 5' 3' | 3 5' 3' |
...ccattttgtaggaaagaaaaaaaaattggtcctcagtcgtgtcgtgcctcatgcttacttaatgtgccttacacagttacactgatctacaacgttgcagGTGGTTTCTACATTGTATTTTCTAGCAGCTTTGGGAAGGGTGGTGTCAGGCGCTGCCGTTGCGTATGCTG
species | Zea mays |
transcript | GRMZM2G149894_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTGTATTAAGGGTGGCTGCAACTGGACATGACAAGAAGCTGTTTTTCAAG GTGGTTTCTACATTGTATTTTCTAGCAGCTTTGGGAAGGGTGGTGTCAGGCEST: gi|60399421|gb|DN232233.1|DN232233
genomic: CTGTATTAAGGGTGGCTGCAACTGGACATGACAAGAAGCTGTTTTTCAAGgtaggctctc ... aacgttgcagGTGGTTTCTACATTGTATTTTCTAGCAGCTTTGGGAAGGGTGGTGTCAGGC
EST: CTGTATTAAGGGTGGCTGCAACTGGACATGACAAGAAGCTGTTTTTCAAG GTGGTTTCCACATTGTATTTTCTAGCAGCTTTGGGAAGGGTGGTGTCAGGCEST: gi|60341125|gb|DN208098.1|DN208098
genomic: CTGTATTAAGGGTGGCTGCAACTGGACATGACAAGAAGCTGTTTTTCAAGgtaggctctc ... aacgttgcagGTGGTTTCTACATTGTATTTTCTAGCAGCTTTGGGAAGGGTGGTGTCAGGC
EST: CTGTATTAAGGGTGGCTGCAACTGGACATGACAAGAAGCTGTTTTTCAAG GTGGTTTCTACATTGTATTTTCTAGCAGCTTTGGGAAGGGTGGTGTCAGGC
genomic: CTGTATTAAGGGTGGCTGCAACTGGACATGACAAGAAGCTGTTTTTCAAGgtaggctctc ... aacgttgcagGTGGTTTCTACATTGTATTTTCTAGCAGCTTTGGGAAGGGTGGTGTCAGGC
gcctcatgcttacttaatgtgccttacacagttacactgatctacaacgttgcagGTGGTTTCTACATTGTATTTTCTAGCAGCTTTGGGAAGGGTGGTGTCAGGCGCTGCCGTTGCGTATGCTG
ttacttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccattttgtaggaaagaaaaaaaaattggtcctcagtcgtgtcgtgcctcatgcttacttaatgtgccttacacagttacactgatctacaacgttgcagGTGGTTTCTACATTGTATTTTCTAGCAGCTTTGGGAAGGGTGGTGTCAGGCGCTGCCGTTGCGTATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - ggaaagaa
- - - - - - - - aaaaaaa
- - - - - - - - - - - - - tggtcct
- - - - - - - - - - - - - - - - - - - - - cgtgcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacactg