Sequence
atgc intronic sequence ATGC exonic sequence...agttagacctttcttacgaactatctgtggttatgatttatacagatggaaattggtattgtggtgccttattttgtctttaatgactttttgcatgcagGGTGCCTGTGGATCCTCTTGAATGGCAGATCTCTCAGGAGATGGCAAATAGCATAGTTGCATCTTTAGCCAATACAGTAGGAGCTGCTGAGTCTGTATTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G149894_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os08g12850.1 (Oryza sativa), 3'ss of exon 1
---agttagacctttcttacga-actatctgtggttatgatttatacagatggaaattggtattgtggtgccttattttgtctttaatgactttttgcatgcagGGTGCCTGTGGATCCTCTTGAATGGCAGATCTCTCAGGAGATGGCAAATAGCATAGTTGCATCTTTAGCCAATACAGTAGGAGCTGCTGAGTCTGTATTA
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ttcatgtaaactatccttattttgctctctctctctctctctctctc---tctctctctctctctctctctctctctctctctctc-tctctttttgcatgtagGGTGCCCGTGGATCCTCTTGAATGGCAGATTTCTCAAGAGATGGCGAATAGTATAGTTGCATCCTTGGCTAACACAATCGGAGCTGCTGAATCTGTATTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6973446|gb|AW438140.1|AW438140EST: CGGCCTCCTCTTCCGCCACCTCCGCATCTC GGTGCCTGTGGATCCTCTTGAATGGCAGATCTCTCAGGAGATGGCAAATAG
genomic: CGGCCTCCTCTTCCGCCACCTCCACATCTCgtgagcaccc ... ttgcatgcagGGTGCCTGTGGATCCTCTTGAATGGCAGATCTCTCAGGAGATGGCAAATAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atggaaattggtattgtggtgccttattttgtctttaatgactttttgcatgcagGGTGCCTGTGGATCCTCTTGAATGGCAGATCTCTCAGGAGATGGCAAATAGCATAGTTGCATCTTTAGCCAATACAGTAGGAGCTGCTGAGTCTGTATTA
ctttaat putative branch site (score: 4)
ctttttgc putative PPT
ttattttgtctttaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agttagacctttcttacgaactatctgtggttatgatttatacagatggaaattggtattgtggtgccttattttgtctttaatgactttttgcatgcagGGTGCCTGTGGATCCTCTTGAATGGCAGATCTCTCAGGAGATGGCAAATAGCATAGTTGCATCTTTAGCCAATACAGTAGGAGCTGCTGAGTCTGTATTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT