1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TGCATTTCTTCTATCCGGAAGAACACTGAAGGGATCTATGTTTGGAGGATGGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAGgtatttatgattcttttgcagaaacaaatgtttgaaaacaaaataagattaacattattaattgttgaagtgtataaatggattgattgccttctcccac...
species | Zea mays |
transcript | GRMZM2G149272_T04 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAG GAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATCEST: gi|5608335|gb|AI902107.1|AI902107
genomic: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAGgtatttatga ... catttatcagGAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATC
EST: GAAACCTAAATCTGATTCTACCTTCATTGGTGGATAAATATGCAGCAAAG GAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATCEST: gi|211510916|gb|FL028116.1|FL028116
genomic: GAAACCTAAATCTGA-TCTACCTTCATTGGTGGATAAATATGCAGCAAAGgtatttatga ... catttatcagGAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATC
EST: GAAACCTAAATCTGATCTACCTTCCATTGGTGGATAAATATGCAGCAAAG GAAATCCAAGTTGATGGCCTAGTEST: gi|5325210|gb|AI783401.1|AI783401
genomic: GAAACCTAAATCTGATCTACCTTC-ATTGGTGGATAAATATGCAGCAAAGgtatttatga ... catttatcagGAAATCCAAGTTGATGGCCTAGT
EST: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAG GAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATCEST: gi|6342730|gb|AW165554.1|AW165554
genomic: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAGgtatttatga ... catttatcagGAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATC
EST: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAG GAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATCEST: gi|60401092|gb|DN233899.1|DN233899
genomic: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAGgtatttatga ... catttatcagGAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATC
EST: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAG GAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATCEST: gi|14203856|gb|BG837533.1|BG837533
genomic: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAGgtatttatga ... catttatcagGAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATC
EST: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAG GAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATCEST: gi|94474409|gb|EB703367.1|EB703367
genomic: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAGgtatttatga ... catttatcagGAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATC
EST: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAG GAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATCEST: gi|6095609|gb|AW120276.1|AW120276
genomic: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAGgtatttatga ... catttatcagGAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATC
EST: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAG GAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATCEST: gi|29945503|gb|CB815672.1|CB815672
genomic: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAGgtatttatga ... catttatcagGAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATC
EST: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAG GAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATCEST: gi|89246725|gb|DY618512.1|DY618512
genomic: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAGgtatttatga ... catttatcagGAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATC
EST: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAG GAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATCEST: gi|67012049|gb|CO440798.1|CO440798
genomic: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAGgtatttatga ... catttatcagGAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATC
EST: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAG GAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATCEST: gi|91874802|gb|EB404759.1|EB404759
genomic: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAGgtatttatga ... catttatcagGAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATC
EST: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAG GAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATCEST: gi|5860434|gb|AW011656.1|AW011656
genomic: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAGgtatttatga ... catttatcagGAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATC
EST: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAG GAAATCCAAGTTGATGGCCTAGTCACGCGGGGGATACCATTCAATGAAATCEST: gi|5847100|gb|AW000179.1|AW000179
genomic: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAGgtatttatga ... catttatcagGAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATC
EST: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAG GAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATCEST: gi|84969909|gb|DW468311.1|DW468311
genomic: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAGgtatttatga ... catttatcagGAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATC
EST: ATAAATATGCAGCAAAG GAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATCEST: gi|5895869|gb|AW037115.1|AW037115
genomic: ATAAATATGCAGCAAAGgtatttatga ... catttatcagGAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATC
EST: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAA-TATGCAGCAAAG GAAATCCAAGT-GATGGCCTAGTCACGCATGATATACCATEST: gi|71769714|gb|DR967651.1|DR967651
genomic: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAGgtatttatga ... catttatcagGAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCAT
EST: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAG GAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATCEST: gi|71762504|gb|DR960441.1|DR960441
genomic: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAGgtatttatga ... catttatcagGAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATC
EST: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAG GAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATCEST: gi|5895724|gb|AW036970.1|AW036970
genomic: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAGgtatttatga ... catttatcagGAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATC
EST: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAG GAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATCEST: gi|5650119|gb|AI920479.1|AI920479
genomic: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAGgtatttatga ... catttatcagGAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATC
EST: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAG GAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATCEST: gi|148957214|gb|EC903224.2|EC903224
genomic: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAGgtatttatga ... catttatcagGAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATC
EST: TCATTGGTGGATAAATATGCAGCAAAG GAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATCEST: gi|5901133|gb|AW042233.1|AW042233
genomic: TCATTGGTGGATAAATATGCAGCAAAGgtatttatga ... catttatcagGAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATC
EST: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAG GAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATCEST: gi|211242574|gb|FL481994.1|FL481994
genomic: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAGgtatttatga ... catttatcagGAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATC
EST: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAG GAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATCEST: gi|5922168|gb|AW055438.1|AW055438
genomic: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAGgtatttatga ... catttatcagGAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATC
EST: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAG GAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATCEST: gi|76016067|gb|DT943237.1|DT943237
genomic: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAGgtatttatga ... catttatcagGAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATC
EST: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAG GAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATCEST: gi|211322359|gb|FL445870.1|FL445870
genomic: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAGgtatttatga ... catttatcagGAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATC
EST: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAG GAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATCEST: gi|71325642|gb|DR799508.1|DR799508
genomic: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAGgtatttatga ... catttatcagGAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATC
EST: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAG GAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATC
genomic: GGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAGgtatttatga ... catttatcagGAAATCCAAGTTGATGGCCTAGTCACGCATGATATACCATTCAATGAAATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCATTTCTTCTATCCGGAAGAACACTGAAGGGATCTATGTTTGGAGGATGGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAGgtatttatgattcttttgcagaaacaaatgtttgaaaacaaaataagattaacattattaattgttgaagtgtataaatggattgattgccttctcccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttctcc