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...atcctataaaattatgttttgttatgcttttgcatgtaactatatgtatgctggtatatttgcatcgtttgcataatgccctgatatgttaaaaatgtagATAAGGGTGCATCTAAAGCAAGCTGGTTATCCAATAGCTAATGATGAGCTGTACCTATCGGGGAACTTTTGTCCACGATCAACAAAAGGAACAAATGCCA
species | Zea mays |
transcript | GRMZM2G147335_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GGACTCACAGTATTGTCTTGTGCAAACCTGTGACTGGTCGAACTCACCAG ATAAGGGTGCATCTAAAGCAAGCTGGTTATCCAATAGCTAATGATGAGCTGEST: gi|6020918|gb|AW065846.1|AW065846
genomic: GGACTCACAGTATTGTCTTGTGCAAACCTGTGACTGGTCGAACTCACCAGgtatttttct ... aaaaatgtagATAAGGGTGCATCTAAAGCAAGCTGGTTATCCAATAGCTAATGATGAGCTG
EST: AGTATTGTCTTGTGCAAACCTGTGACTGGTCGAACTCACCAG ATAAGGGTGCATCTAAAGCAAGCTGGTTATCCAATAGCTAATGATGAGCTG
genomic: AGTATTGTCTTGTGCAAACCTGTGACTGGTCGAACTCACCAGgtatttttct ... aaaaatgtagATAAGGGTGCATCTAAAGCAAGCTGGTTATCCAATAGCTAATGATGAGCTG
gtatgctggtatatttgcatcgtttgcataatgccctgatatgttaaaaatgtagATAAGGGTGCATCTAAAGCAAGCTGGTTATCCAATAGCTAATGATGAGCTGTACCTATCGGGGAACTTTTGTCCACGATCAACAAAAGGAACAAATGCCA
ccctgat putative branch site (score: 3)
atatgttaaaaatgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcctataaaattatgttttgttatgcttttgcatgtaactatatgtatgctggtatatttgcatcgtttgcataatgccctgatatgttaaaaatgtagATAAGGGTGCATCTAAAGCAAGCTGGTTATCCAATAGCTAATGATGAGCTGTACCTATCGGGGAACTTTTGTCCACGATCAACAAAAGGAACAAATGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - tgttttg
- - - - - - - - - - - tatgctt
- - - - - - - - - - - - - - tttgcat
- - - - - - - - - - - - - - - tgcatgt
- - - - - - - - - - - - - - - - - - - - - - tgtatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgcatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgccctg