1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgagtgcttactgttgcttataaagtttttttttcttctgtctttagggctgccaataaagagtttgattagagaacgattttttccaagtgctttatggtaggatggtagattgtgtattcgttgtcgtaatgcttttctgtttggcagTTATGATAGAGATGAGGAAGGACTATGGTTGCATTGTGTGCGGTACACTGGTCCTGATTGGAGCTACGAATGTCCTTATCCTGATTGGGCGTTCCTTGGT
species | Zea mays |
transcript | GRMZM2G147335_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTTGATATCGACCCCATGTGCACAAACTGTCCAAATCTTGCTCCAGTAGG TTATGATAGAGATGAGGAAGGACTATGEST: gi|78092631|gb|DV521005.1|DV521005
genomic: TTTGATATCGACCCCATGTGCACAAACTGTCCAAATCTTGCTCCAGTAGGgtgagtgctt ... tgtttggcagTTATGATAGAGATGAGGAAGGACTATG
EST: TTTGATATCGACCCCATGTGCACAAACTGTCCAAATCTTGCTCCAGTAGG TTATGATAGAGATGAGGAAGGACTATGGTTGCATTGTGTGCGGTACACTGG
genomic: TTTGATATCGACCCCATGTGCACAAACTGTCCAAATCTTGCTCCAGTAGGgtgagtgctt ... tgtttggcagTTATGATAGAGATGAGGAAGGACTATGGTTGCATTGTGTGCGGTACACTGG
tatggtaggatggtagattgtgtattcgttgtcgtaatgcttttctgtttggcagTTATGATAGAGATGAGGAAGGACTATGGTTGCATTGTGTGCGGTACACTGGTCCTGATTGGAGCTACGAATGTCCTTATCCTGATTGGGCGTTCCTTGGT
cttttctgttt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgcttactgttgcttataaagtttttttttcttctgtctttagggctgccaataaagagtttgattagagaacgattttttccaagtgctttatggtaggatggtagattgtgtattcgttgtcgtaatgcttttctgtttggcagTTATGATAGAGATGAGGAAGGACTATGGTTGCATTGTGTGCGGTACACTGGTCCTGATTGGAGCTACGAATGTCCTTATCCTGATTGGGCGTTCCTTGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT