Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcacctgaacacacacacacacactcccagtcgcagggacacctgcttacgaaatacatttccatgcttcagGCACTGGGAGTTCCTGTACATAGACTTGTAAAAGCTGCCGACTCAGTTTCGGTACGTTCTCAAGTCGCTGGGTTCTGCGGTCAATTCGCAACAGGCATGC

Basic information

species Zea mays
transcript GRMZM2G147268_T02
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78111112|gb|DV529509.1|DV529509
EST:     ACGGCTTGAAGCTTCACATCGATGGAGCTCGTATTTTCAATGCCTCTGTG                         GCACTGGGAGTTCCTGTACATAGACTTGTAAAAGCTGCCGACTCAGTTTCG
genomic: ACGGCTTGAAGCTTCACATCGATGGAGCTCGTATTTTCAATGCCTCTGTGgtaagcacct ... catgcttcagGCACTGGGAGTTCCTGTACATAGACTTGTAAAAGCTGCCGACTCAGTTTCG
EST: gi|71447159|gb|DR828209.1|DR828209
EST:     ACGGCTTGAAGCTTCACATCGATGGAGCTCGTATTTTCAATGCCTCTGTG                         GCACTGGGAGTTCCTGTACATAGACTTGTAAAAGCTGCCGACTCAGTTTCG
genomic: ACGGCTTGAAGCTTCACATCGATGGAGCTCGTATTTTCAATGCCTCTGTGgtaagcacct ... catgcttcagGCACTGGGAGTTCCTGTACATAGACTTGTAAAAGCTGCCGACTCAGTTTCG
EST: gi|71301856|gb|DR786997.1|DR786997
EST:     ACGGCTTGAAGCTTCACATCGATGGAGCTCGTATTTTCAATGCCTCTGTG                         GCACTGGGAGTTCCTGTACATAGACTTGTAAAAGCTGCCGACTCAGTTTCG
genomic: ACGGCTTGAAGCTTCACATCGATGGAGCTCGTATTTTCAATGCCTCTGTGgtaagcacct ... catgcttcagGCACTGGGAGTTCCTGTACATAGACTTGTAAAAGCTGCCGACTCAGTTTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacacactcccagtcgcagggacacctgcttacgaaatacatttccatgcttcagGCACTGGGAGTTCCTGTACATAGACTTGTAAAAGCTGCCGACTCAGTTTCGGTACGTTCTCAAGTCGCTGGGTTCTGCGGTCAATTCGCAACAGGCATGC
                          tgcttac  putative branch site (score: 2)
                                       catttcc  putative PPT
                                  aaatacattt  TA-rich tract