1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CCCGCGTCCGCGAAGGCCAAGGTTCTCAGCACGGCGCGCGGCCCGCCTCCCCACCGGTCTCGCTCTCGCAGTCCCTCGACCGCTCGTCCCGGCAGAGCAGgtaggtcgtttcatcctcgcatcccggtgcgcgaccctgccctcacctgtttcacctgtcgtcttttgtgccgcgcctcgagatgatattattgtctacg...
species | Zea mays |
transcript | GRMZM2G147268_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCACCGGTCTCGCTCTCGCAGTCCCTCGACCGCTCGTCCCGGCAGAGCAG TCGCAGCACGATGGTGACCAACGTGGTGGACCTCCGGTCGGACACGGTCACEST: gi|37416780|gb|CF646041.1|CF646041
genomic: CCACCGGTCTCGCTCTCGCAGTCCCTCGACCGCTCGTCCCGGCAGAGCAGgtaggtcgtt ... cgcctcgcagTCGCAGCACGATGGTGACCAACGTGGTGGACCTCCGGTCGGACACGGTCAC
EST: CCACCGGTCTCGCTCTCGCAGTCCCTCGACCGCTCGTCCCGGCAGAGCAG TCGCAGCACGATGGTGACCAACGTGGTGGACCTCCGGTCGGACACGGTCACEST: gi|78115950|gb|DV534338.1|DV534338
genomic: CCACCGGTCTCGCTCTCGCAGTCCCTCGACCGCTCGTCCCGGCAGAGCAGgtaggtcgtt ... cgcctcgcagTCGCAGCACGATGGTGACCAACGTGGTGGACCTCCGGTCGGACACGGTCAC
EST: GTCCCGGCAGAGCAG TCGCAGCACGATGGTGACCAACGTGGTGGACCTCCGGTCGGACACGGTCAC
genomic: GTCCCGGCAGAGCAGgtaggtcgtt ... cgcctcgcagTCGCAGCACGATGGTGACCAACGTGGTGGACCTCCGGTCGGACACGGTCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCGCGTCCGCGAAGGCCAAGGTTCTCAGCACGGCGCGCGGCCCGCCTCCCCACCGGTCTCGCTCTCGCAGTCCCTCGACCGCTCGTCCCGGCAGAGCAGgtaggtcgtttcatcctcgcatcccggtgcgcgaccctgccctcacctgtttcacctgtcgtcttttgtgccgcgcctcgagatgatattattgtctacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG