1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatgtgaaagcttggacccctttccatctttcactgttatagcgtttgatttttcctgtgatagtacgatttcatgttttcagAAAGCAATCAAAGAGCTACTGGAAGGCAGTACTGAGTTGGGGCATTCGATAAACGGAGCTACCAAAAGCTCGTATGGGCACTAGATCACTCGGATTCTGC
species | Zea mays |
transcript | GRMZM2G147256_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATTACCAGATCTCAGACGCTGATGTTGGGTACGCATTGGCATGTGTCGAG AAAGCAATCAAAGAGCTACTGGAAGGCAGTACTGAGTTGGGGCATTCGATAEST: gi|71299596|gb|DR785811.1|DR785811
genomic: ATTACCAGATTTCAGACGCTGATGTTGGGTACGCATTGGCATGTGTCGAGgtatgtgaaa ... atgttttcagAAAGCAATCAAAGAGCTACTGGAAGGCAGTACTGAGTTGGGGCATTCGATA
EST: ATTACCAGATTTCAGACGCCGATGTTGGGTACGCATTGGCATGTGTCGAG AAAGCAATCAAAGAGCTACTGGAAGGCAGTACTGGGTTGGGGCATTCGATAEST: gi|76912287|gb|DV164658.1|DV164658
genomic: ATTACCAGATTTCAGACGCTGATGTTGGGTACGCATTGGCATGTGTCGAGgtatgtgaaa ... atgttttcagAAAGCAATCAAAGAGCTACTGGAAGGCAGTACTGAGTTGGGGCATTCGATA
EST: ATTACCAGATTTCAGACGCTGATGTTGGGTACGCATTGGCATGTGTCGAG AAAGCAATCAAAGAGCTACTGGAAGGCAGTACTGAGTTGGGGCATTCGATAEST: gi|101397910|gb|EB820832.1|EB820832
genomic: ATTACCAGATTTCAGACGCTGATGTTGGGTACGCATTGGCATGTGTCGAGgtatgtgaaa ... atgttttcagAAAGCAATCAAAGAGCTACTGGAAGGCAGTACTGAGTTGGGGCATTCGATA
EST: ATTCCCAGATTTCAGACGCTGATGTTGGGTACGCATTGGCATGTGTCGAG AAAGCAATCAAAGAGCTACTGGAAGGCAGTACTGAGTTGGGGCATTCGATAEST: gi|149098292|gb|EE184260.2|EE184260
genomic: ATTACCAGATTTCAGACGCTGATGTTGGGTACGCATTGGCATGTGTCGAGgtatgtgaaa ... atgttttcagAAAGCAATCAAAGAGCTACTGGAAGGCAGTACTGAGTTGGGGCATTCGATA
EST: ATTACCAGATTTCAGACGCTGATGTTGGGTACGCATTGGCATGTGTCGAG AAAGCAATCAAAGAGCTACTGGAAGGCAGTACTGAGTTGGGGCATTCGATAEST: gi|89763649|gb|DY690753.1|DY690753
genomic: ATTACCAGATTTCAGACGCTGATGTTGGGTACGCATTGGCATGTGTCGAGgtatgtgaaa ... atgttttcagAAAGCAATCAAAGAGCTACTGGAAGGCAGTACTGAGTTGGGGCATTCGATA
EST: ATTCCCAGATTTCAGACGCTGATGTTGGGTACGCATTGGCATGTGTCGAG AAAGCAATCAAAGAGCTACTGGAAGGCAGTACTGAGTTGGGGCATTCGATAEST: gi|94474055|gb|EB703013.1|EB703013
genomic: ATTACCAGATTTCAGACGCTGATGTTGGGTACGCATTGGCATGTGTCGAGgtatgtgaaa ... atgttttcagAAAGCAATCAAAGAGCTACTGGAAGGCAGTACTGAGTTGGGGCATTCGATA
EST: ATTACCAGATTTCAGACGCTGATGTTGGGTACGCATTGGCATGTGTCGAG AAAGCAATCAAAGAGCTACTGGAAGGCAGTACTGAGTTGGGGCATTCGATAEST: gi|84970143|gb|DW468493.1|DW468493
genomic: ATTACCAGATTTCAGACGCTGATGTTGGGTACGCATTGGCATGTGTCGAGgtatgtgaaa ... atgttttcagAAAGCAATCAAAGAGCTACTGGAAGGCAGTACTGAGTTGGGGCATTCGATA
EST: ATTACCAGATTTCAGACGCTGATGTTGGGTACGCATTGGCATGTGTCGAG AAAGCAATCAAAGAGCTACTGGAAGGCAGTACTGAGTTGGGGCATTCGATAEST: gi|78124407|gb|DV542791.1|DV542791
genomic: ATTACCAGATTTCAGACGCTGATGTTGGGTACGCATTGGCATGTGTCGAGgtatgtgaaa ... atgttttcagAAAGCAATCAAAGAGCTACTGGAAGGCAGTACTGAGTTGGGGCATTCGATA
EST: ATTACCAGATTTCAGACGCTGATGTTGGGTACGCATTGGCATGTGTCGAG AAAGCAATCAAAGAGCTACTGGAAGGCAGTACTGAGTTGGGGCATTCGATAEST: gi|93284471|gb|EB676735.1|EB676735
genomic: ATTACCAGATTTCAGACGCTGATGTTGGGTACGCATTGGCATGTGTCGAGgtatgtgaaa ... atgttttcagAAAGCAATCAAAGAGCTACTGGAAGGCAGTACTGAGTTGGGGCATTCGATA
EST: ATTACCAGATTTCAGACGCTGATGTTGGGTACGCATTGGCATGTGTCGAG AAAGCAATCAAAGAGCTACTGGAAGGCAGTACTGAGTTGGGGCATTCGATAEST: gi|74236569|gb|DT644483.1|DT644483
genomic: ATTACCAGATTTCAGACGCTGATGTTGGGTACGCATTGGCATGTGTCGAGgtatgtgaaa ... atgttttcagAAAGCAATCAAAGAGCTACTGGAAGGCAGTACTGAGTTGGGGCATTCGATA
EST: ATTACCAGATTTCAGACGCTGATGTTGGGTACGCATTGGCATGTGTCGAG AAAGCAATCAAAGAGCTACTGGAAGGCAGTACTGAGTTGGGGCATTCGATAEST: gi|78119582|gb|DV537966.1|DV537966
genomic: ATTACCAGATTTCAGACGCTGATGTTGGGTACGCATTGGCATGTGTCGAGgtatgtgaaa ... atgttttcagAAAGCAATCAAAGAGCTACTGGAAGGCAGTACTGAGTTGGGGCATTCGATA
EST: ATTACCAGATTTCAGACGCTGATGTTGGGTACGCATTGGCATGTGTCGAG AAAGCAATCAAAGAGCTACTGGAAGGCAGTACTGAGTTGGGGCATTCGATAEST: gi|50336979|gb|CO532105.1|CO532105
genomic: ATTACCAGATTTCAGACGCTGATGTTGGGTACGCATTGGCATGTGTCGAGgtatgtgaaa ... atgttttcagAAAGCAATCAAAGAGCTACTGGAAGGCAGTACTGAGTTGGGGCATTCGATA
EST: ATTACCAGATTTCAGACGCTGATGTTGGGTACGCATTGGCATGTGTCGAG AAAGCAATCAAAGAGCTACTGGAAGGCAGTACTGAGTTGGGGCATTCGATAEST: gi|50335970|gb|CO531096.1|CO531096
genomic: ATTACCAGATTTCAGACGCTGATGTTGGGTACGCATTGGCATGTGTCGAGgtatgtgaaa ... atgttttcagAAAGCAATCAAAGAGCTACTGGAAGGCAGTACTGAGTTGGGGCATTCGATA
EST: ATTACCAGATTTCAGACGCTGATGTTGGGTACGCATTGGCATGTGTCGAG AAAGCAATCAAAGAGCTACTGGAAGGCAGTACTGAGTTGGGGCATTCGATAEST: gi|60356954|gb|DN223927.1|DN223927
genomic: ATTACCAGATTTCAGACGCTGATGTTGGGTACGCATTGGCATGTGTCGAGgtatgtgaaa ... atgttttcagAAAGCAATCAAAGAGCTACTGGAAGGCAGTACTGAGTTGGGGCATTCGATA
EST: ATTACCAGATTTCAGACGCTGATGTTGGGTACGCATTGGCATGTGTCGAG AAAGCAATCAAAGAGCTACTGGAAGGCAGTACTGAGTTGGGGCATTCGATAEST: gi|78124376|gb|DV542760.1|DV542760
genomic: ATTACCAGATTTCAGACGCTGATGTTGGGTACGCATTGGCATGTGTCGAGgtatgtgaaa ... atgttttcagAAAGCAATCAAAGAGCTACTGGAAGGCAGTACTGAGTTGGGGCATTCGATA
EST: ATTACCAGATTTCAGACGCTGATGTTGGGTACGCATTGGCATGTGTCGAG AAAGCAATCAAAGAGCTACTGGAAGGCAGTACTGGGTTGGGGCATTCGATAEST: gi|71758972|gb|DR956909.1|DR956909
genomic: ATTACCAGATTTCAGACGCTGATGTTGGGTACGCATTGGCATGTGTCGAGgtatgtgaaa ... atgttttcagAAAGCAATCAAAGAGCTACTGGAAGGCAGTACTGAGTTGGGGCATTCGATA
EST: ATTACCAGATTTCAGACGCTGATGTTGGGTACGCATTGGCATGTGTCGAG AAAGCAATCAAAGAGCTACTGGAAGGCAGTACTGAGTTGGGGCATTCGATAEST: gi|14245232|gb|BG873814.1|BG873814
genomic: ATTACCAGATTTCAGACGCTGATGTTGGGTACGCATTGGCATGTGTCGAGgtatgtgaaa ... atgttttcagAAAGCAATCAAAGAGCTACTGGAAGGCAGTACTGAGTTGGGGCATTCGATA
EST: ATTACCAGATTTCAGACGCTGATGTTGGGTACGCATTGGCATGTGTCGAG AAAGCAATCAAAGAGCTACTGGAAGGCAGTACTGAGTTGGGGCATTCGATA
genomic: ATTACCAGATTTCAGACGCTGATGTTGGGTACGCATTGGCATGTGTCGAGgtatgtgaaa ... atgttttcagAAAGCAATCAAAGAGCTACTGGAAGGCAGTACTGAGTTGGGGCATTCGATA
tttcactgttatagcgtttgatttttcctgtgatagtacgatttcatgttttcagAAAGCAATCAAAGAGCTACTGGAAGGCAGTACTGAGTTGGGGCATTCGATAAACGGAGCTACCAAAAGCTCGTATGGGCACTAGATCACTCGGATTCTGC
gtttgat putative branch site (score: 17)
tgttttc putative PPT
tttgattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgaaagcttggacccctttccatctttcactgttatagcgtttgatttttcctgtgatagtacgatttcatgttttcagAAAGCAATCAAAGAGCTACTGGAAGGCAGTACTGAGTTGGGGCATTCGATAAACGGAGCTACCAAAAGCTCGTATGGGCACTAGATCACTCGGATTCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA