1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTGTTTATCTGTAGAATACACTGACAAGGTTGGTGAAATTGCCAAGAGCCATGGCTTGAAGCTTCATATCGATGGAGCTCGCATCTTCAATGCGTCTGTGgtgagtagtatggtacatgcatgtgctgtactgtgattttatttatatttgtttctgatattatctgcaacaaagttagtaaaacgaccaattagactat...
species | Zea mays |
transcript | GRMZM2G147256_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ATGGCTTGAAGCTTCATATCGATGGAGCTCGCATCTTCAATGCGTCTGTG GCACTTGGAGTTCCTGTAGATAGACTCGTGAAAGCTGCTGATTCAGTTTCGEST: gi|149098292|gb|EE184260.2|EE184260
genomic: ATGGCTTGAAGCTTCATATCGATGGAGCTCGCATCTTCAATGCGTCTGTGgtgagtagta ... attgtaccagGCACTTGGAGTTCCTGTAGATAGACTCGTGAAAGCTGCTGATTCAGTTTCG
EST: ATGGCTTGAAGCTCCATATCGATGGAGCTCGCATCTTCAATGCGTCTGTG GCACTTGGAGTTCCTGTAGATAGACTCGTGAAAGCTGCTGATTCAGTTTCGEST: gi|94474055|gb|EB703013.1|EB703013
genomic: ATGGCTTGAAGCTTCATATCGATGGAGCTCGCATCTTCAATGCGTCTGTGgtgagtagta ... attgtaccagGCACTTGGAGTTCCTGTAGATAGACTCGTGAAAGCTGCTGATTCAGTTTCG
EST: ATCGATGGAGCTCGCATCTTCAATGCGTCGGTG GCACTGGGAGTTCCTGTAGATAGACTCGTGAAAGCTGCTGATTCAGTTTCGEST: gi|84970143|gb|DW468493.1|DW468493
genomic: ATCGATGGAGCTCGCATCTTCAATGCGTCTGTGgtgagtagta ... attgtaccagGCACTTGGAGTTCCTGTAGATAGACTCGTGAAAGCTGCTGATTCAGTTTCG
EST: CTGGCTTGAAGCTTCATATCGATGGAGCTCGCATCTTCAATGCGTCTGTG GCACTTGGAGTTCCTGTAGATAGACTCGTGAAAGCTGCTGATTCAGTTTCGEST: gi|78124407|gb|DV542791.1|DV542791
genomic: ATGGCTTGAAGCTTCATATCGATGGAGCTCGCATCTTCAATGCGTCTGTGgtgagtagta ... attgtaccagGCACTTGGAGTTCCTGTAGATAGACTCGTGAAAGCTGCTGATTCAGTTTCG
EST: ATGGCTTGAAGCTTCATATCGATGGAGCTCGCATCTTCAATGCGTCTGTG GCACTTGGAGTTCCTGTAGATAGACTCGTGAAAGCTGCTGATTCAGTTTCGEST: gi|78119582|gb|DV537966.1|DV537966
genomic: ATGGCTTGAAGCTTCATATCGATGGAGCTCGCATCTTCAATGCGTCTGTGgtgagtagta ... attgtaccagGCACTTGGAGTTCCTGTAGATAGACTCGTGAAAGCTGCTGATTCAGTTTCG
EST: TCAATGCGTCTGGG GCACTTGGAGTTCCTGTAGATAGACTCGTGAAAGCTGCTGATTCAGTTTCGEST: gi|78124376|gb|DV542760.1|DV542760
genomic: TCAATGCGTCTGTGgtgagtagta ... attgtaccagGCACTTGGAGTTCCTGTAGATAGACTCGTGAAAGCTGCTGATTCAGTTTCG
EST: TCAATGCGTCTGTG GCACTTAGAGTTCCTGTAGATAGACTCGTGAAAGCTGCTGATTCAGTTTCGEST: gi|71758972|gb|DR956909.1|DR956909
genomic: TCAATGCGTCTGTGgtgagtagta ... attgtaccagGCACTTGGAGTTCCTGTAGATAGACTCGTGAAAGCTGCTGATTCAGTTTCG
EST: AATGCGTCTGTG GCAC-TGGAGGTTCCTGTAGATAGACTCGTGAAAGCTGCTGATTCAGTTTC
genomic: AATGCGTCTGTGgtgagtagta ... attgtaccagGCACTTGGA-GTTCCTGTAGATAGACTCGTGAAAGCTGCTGATTCAGTTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTTTATCTGTAGAATACACTGACAAGGTTGGTGAAATTGCCAAGAGCCATGGCTTGAAGCTTCATATCGATGGAGCTCGCATCTTCAATGCGTCTGTGgtgagtagtatggtacatgcatgtgctgtactgtgattttatttatatttgtttctgatattatctgcaacaaagttagtaaaacgaccaattagactat
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT