1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatttcatgcttcttttataggaagacccctgtaaagtttgtagctcccttgttaaccttgttcttcagCATTGGACAGCGATGATTTGCTTTACCTGAAAGAGCAAATGGAAGCTGAAGAAGATGCAGAGCGCCTTCTTCGTCATACTGAGAAGCGGGCATTTGCTGC
species | Zea mays |
transcript | GRMZM2G146786_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GATGCAAGAGGTTGCTGGTGATAGGGGAGGCTACCTTCACGGACGAGGAG CATTGGACAGCGATGATTTGCTTTACCTGAAAGAGCAAATGGAAGCTGAAGEST: gi|211486969|gb|FL249576.1|FL249576
genomic: GATGCAAGAGGTTGCTGGTGATAGGGGAGGCTACCTTCACGGACGAGGAGgtatttcatg ... tgttcttcagCATTGGACAGCGATGATTTGCTTTACCTGAAAGAGCAAATGGAAGCTGAAG
EST: GATGCAAGAGGTTGCTGGTGATAGGGGAGGCTACCTTCACGGACGAGGAG CATTGGACAGCGATGATTTGCTTTACC
genomic: GATGCAAGAGGTTGCTGGTGATAGGGGAGGCTACCTTCACGGACGAGGAGgtatttcatg ... tgttcttcagCATTGGACAGCGATGATTTGCTTTACC
tttataggaagacccctgtaaagtttgtagctcccttgttaaccttgttcttcagCATTGGACAGCGATGATTTGCTTTACCTGAAAGAGCAAATGGAAGCTGAAGAAGATGCAGAGCGCCTTCTTCGTCATACTGAGAAGCGGGCATTTGCTGC
tgttaac putative branch site (score: 57)
ccttgttcttc CT-rich tract
taaagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttcatgcttcttttataggaagacccctgtaaagtttgtagctcccttgttaaccttgttcttcagCATTGGACAGCGATGATTTGCTTTACCTGAAAGAGCAAATGGAAGCTGAAGAAGATGCAGAGCGCCTTCTTCGTCATACTGAGAAGCGGGCATTTGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC