Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGCAGCAATTTTAGCTGATTCTACACCTGCTGTCCCTGTGGCTCTTCGTGTTGAACCTAAACCTAAAAGTGATATAAGgtaagctgccttcaagacagccctccatcttttaacagtaccttttccttttatatatatatcccaaaatgagctatatcttttcgttcttatgatttgggtgcttgcgttatggacag

Basic information

species Zea mays
transcript GRMZM2G146786_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G146786_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os02g42540.1 (Oryza sativa), 5'ss of exon 5
AAAGCAGCAATTTTAGCTGATTCTACACCTGCTGTCCCTGTGGCTCTTCGTGTTGAACCTAAACCTAAAAGTGATATAAGgtaagctgccttcaa-gacagccctccatcttttaacagtaccttttccttttatatatatatcccaaaatgagctatatcttttcgttcttatgatttgggtgcttgcgttatggacag
||||||||||||||||||||||||||||||||||| |||| ||||||||| || || |||||||||||||| ||||| ||||||||||  |  ||  |  |   | | ||  |  ||||| | ||| | | ||||    | ||       ||  |                                             
AAAGCAGCAATTTTAGCTGATTCTACACCTGCTGTTCCTGCGGCTCTTCGAGTCGAGCCTAAACCTAAAAGCGATATCAGgtaagctgtgtgtaacaaaggttttacttccatctacagtccgtttgcttattatgggcacatgttgtc-tggacag-------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86467850|gb|DY234220.1|DY234220
EST:     GCTGTCCCTGTGGCTCTTCGTGTTGAACCTAAACCTAAAAGTGATATAAG                         GCAACAAGATCTTTTGAAGAACATTGTTGGGATCAAACCAAAGCGACCAAA
genomic: GCTGTCCCTGTGGCTCTTCGTGTTGAACCTAAACCTAAAAGTGATATAAGgtaagctgcc ... ttatggacagGCAACAAGATCTTTTGAAGAACATTGTTGGGATCAAACCAAAGCGACCAAA
EST: gi|74239761|gb|DT647675.1|DT647675
EST:     GCTGTCCCTGTGGCTCTTCGTGTTGAACCTAAACCTAAAAGTGATATAAG                         GCAACAAGATCTTTTGAAGAACATTGTTGGGATCAAACCAAAGCGACCAAA
genomic: GCTGTCCCTGTGGCTCTTCGTGTTGAACCTAAACCTAAAAGTGATATAAGgtaagctgcc ... ttatggacagGCAACAAGATCTTTTGAAGAACATTGTTGGGATCAAACCAAAGCGACCAAA
EST: gi|211536312|gb|FL400261.1|FL400261
EST:     GCTGTCCCTGTGGCTCTTCGTGTTGAACCTAAACCTAAAAGTGATATAAG                         GCAACAAGATCTTTTGAAGAACATTGTTGGGATCAAACCAAAGCGACCAAA
genomic: GCTGTCCCTGTGGCTCTTCGTGTTGAACCTAAACCTAAAAGTGATATAAGgtaagctgcc ... ttatggacagGCAACAAGATCTTTTGAAGAACATTGTTGGGATCAAACCAAAGCGACCAAA
EST: gi|211413441|gb|FL400135.1|FL400135
EST:     GCTGTCCCTGTGGCTCTTCGTGTTSAACCTAAACCTAAAAGTGATATAAG                         GCAACAAGATCTTTTGAAGAACATTGTTTGGGATC
genomic: GCTGTCCCTGTGGCTCTTCGTGTTGAACCTAAACCTAAAAGTGATATAAGgtaagctgcc ... ttatggacagGCAACAAGATCTTTTGAAGAACATTGTT-GGGATC
EST: gi|32943201|gb|CF048020.1|CF048020
EST:     GCTGTCCCTGTGGCTCTTCGTGTTGAACCTAAACCTAAAAGTGATATAAG                         GCAACAAGATCTTTTGAAGAACATTGTTGGGATCAAACCAAAGCGACCAAA
genomic: GCTGTCCCTGTGGCTCTTCGTGTTGAACCTAAACCTAAAAGTGATATAAGgtaagctgcc ... ttatggacagGCAACAAGATCTTTTGAAGAACATTGTTGGGATCAAACCAAAGCGACCAAA
EST: gi|211527056|gb|FL387984.1|FL387984
EST:     GCTGTCCCTGTGGCTCTTCGTGTTGAACCTAAACCTAAAAGTGATATAAG                         GCAACAAGATCTTTT
genomic: GCTGTCCCTGTGGCTCTTCGTGTTGAACCTAAACCTAAAAGTGATATAAGgtaagctgcc ... ttatggacagGCAACAAGATCTTTT
EST: gi|93016518|gb|EB642038.1|EB642038
EST:     GCTGTCCCTGTGGCTCTTCGTGTTGAACCTAAACCTAAAAGTGATATAAG                         GCAACAAGATCTTTTGAAGAACATTGTTGGGATCAAACCAAAGCGACCAAA
genomic: GCTGTCCCTGTGGCTCTTCGTGTTGAACCTAAACCTAAAAGTGATATAAGgtaagctgcc ... ttatggacagGCAACAAGATCTTTTGAAGAACATTGTTGGGATCAAACCAAAGCGACCAAA
EST: gi|60341693|gb|DN208666.1|DN208666
EST:     GCTGTCCCTGTGGCTCTTCGTGTTGAACCTAAACCTAAAAGTGATATAAG                         GCAACAAGATCTTTTGAAGAACATTGTTGGGATCAAACCAAAGCGACCAAA
genomic: GCTGTCCCTGTGGCTCTTCGTGTTGAACCTAAACCTAAAAGTGATATAAGgtaagctgcc ... ttatggacagGCAACAAGATCTTTTGAAGAACATTGTTGGGATCAAACCAAAGCGACCAAA
EST: gi|211271661|gb|FL410597.1|FL410597
EST:     GCTGTCCCTGTGGCTCTTCGTGTTGAACCTAAACCTAAAAGTGATATAAG                         GCAACAAGATCTTTTGAAGAACATTGTTG
genomic: GCTGTCCCTGTGGCTCTTCGTGTTGAACCTAAACCTAAAAGTGATATAAGgtaagctgcc ... ttatggacagGCAACAAGATCTTTTGAAGAACATTGTTG
EST: gi|211039375|gb|FL382073.1|FL382073
EST:     GCTGTCCCTGTGGCTCTTCGTGTTGAACCTAAACCTAAAAGTGATATAAG                         GCAACAAGGATCTTT
genomic: GCTGTCCCTGTGGCTCTTCGTGTTGAACCTAAACCTAAAAGTGATATAAGgtaagctgcc ... ttatggacagGCAACAAG-ATCTTT
EST: gi|93016517|gb|EB642037.1|EB642037
EST:     GCGGTCCCTGTGGCTCTTCGTGTTGAACCTAAACCTAAAAGTGATATAAG                         GCAACAAGATCTTTTGAAGAACATTGTTGGGATCAAACCAAAGCGACCAAA
genomic: GCTGTCCCTGTGGCTCTTCGTGTTGAACCTAAACCTAAAAGTGATATAAGgtaagctgcc ... ttatggacagGCAACAAGATCTTTTGAAGAACATTGTTGGGATCAAACCAAAGCGACCAAA
EST: gi|89758028|gb|DY687371.1|DY687371
EST:     GGTGGCCCTGGGGCTCTTCGTGGTGAACCTAAACCTAAAAGTGATATAAG                         GCAACAAGATCTTTTGAAGAACATTGTTGGGATCAAACCAAAGCGACCAAA
genomic: GCTGTCCCTGTGGCTCTTCGTGTTGAACCTAAACCTAAAAGTGATATAAGgtaagctgcc ... ttatggacagGCAACAAGATCTTTTGAAGAACATTGTTGGGATCAAACCAAAGCGACCAAA
EST: gi|33771049|gb|CF273343.1|CF273343
EST:     GCTGTCCCTGTGGCTCTTCGTGTTGAACCTAAACCTAAAAGTGATATAAG                         GCAACAAGATCTTTTGAAGAACATTGTTGGGATCAAACCAAAGCGACCAAA
genomic: GCTGTCCCTGTGGCTCTTCGTGTTGAACCTAAACCTAAAAGTGATATAAGgtaagctgcc ... ttatggacagGCAACAAGATCTTTTGAAGAACATTGTTGGGATCAAACCAAAGCGACCAAA