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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTTCGGAACCAGGGTTAGGGTTTCGCGTCCTCCCGTCGTCATCCTCAGCCATGTCCGGGCGCGAGGTCCGCGAGTACACCAATCTCAGCGACCCCAAAGgtgtgcgcctccttccactgatttatcgatttgcctaccctgttttccccgttgggcgttctcatcgaattcccgagtttggctccgtgcatgtgcag

Basic information

species Zea mays
transcript GRMZM2G146786_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G146786_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g42540.1 (Oryza sativa), 5'ss of exon 1
CGTTCGGAACCAGGGTTAGGGTTTCGCGTCCTCCCG-----TCGTCATCCTCAGCCATGTCCGGGCGCGAGGTCCGCGAGTACACCAATCTCAGCGACCCCAAAGgtgtgcgcctccttccactgatttatcgatttgcctaccctgttttccccgttgggcgttct------catcgaattcccgagtttggctccgtgcatgtgcag
      |    |||  |  |      || ||| |||     ||  |  |  |||||||||| || |||||||||||||||||||| ||||||||||||||||||||| ||||  |||  |   |  ||  |   |     |    | || |||||  | |  |||||        |||  |   | |  |||  |  | |  | |||||
-----AGGGTTAGGTCTCCGAGCCTCCGACCTTCCGATTCCTCTCCGCCGGCAGCCATGTCAGGTCGCGAGGTCCGCGAGTACACGAATCTCAGCGACCCCAAAGgtttgcgattccggcgcatccttccttcttcccggtttattattctcccccattgatgttctgtgcgctttcggttgttcaatattgattttgggt-tctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211273251|gb|FL384319.1|FL384319
EST:     CATGTCCGGGCGCGAGGTCCGCGAGTACACCAATCTCAGCGACCCCAAAG                         ACAGGAAGTTTGGTAAAGGGAAGGATAAGATCGACGATGAGGACATCACCT
genomic: CATGTCCGGGCGCGAGGTCCGCGAGTACACCAATCTCAGCGACCCCAAAGgtgtgcgcct ... gcatgtgcagACAGGAAGTTTGGTAAAGGGAAGGATAAGATCGACGATGAGGACATCACCT
EST: gi|211532797|gb|FL373547.1|FL373547
EST:     CATGTCCGGGCGCGAGGTCCGCGAGTACACCAATCTCAGCGACCCCAAAG                         ACAGGAAGTTTGGTAAAGGGAAGGATAAGATCGACGATGAGGACATCACCT
genomic: CATGTCCGGGCGCGAGGTCCGCGAGTACACCAATCTCAGCGACCCCAAAGgtgtgcgcct ... gcatgtgcagACAGGAAGTTTGGTAAAGGGAAGGATAAGATCGACGATGAGGACATCACCT
EST: gi|211082871|gb|FL417813.1|FL417813
EST:     CATGTCCGGGCGCGAGGTCCGCGAGTACACCAATCTCAGCGACCCCAAAG                         ACAGGAAGTTTGGTAAAGGGAAGGATAAGATCGACGATGAGGACATCACCT
genomic: CATGTCCGGGCGCGAGGTCCGCGAGTACACCAATCTCAGCGACCCCAAAGgtgtgcgcct ... gcatgtgcagACAGGAAGTTTGGTAAAGGGAAGGATAAGATCGACGATGAGGACATCACCT
EST: gi|211536312|gb|FL400261.1|FL400261
EST:     CATGTCCGGGCGCGAGGTCCGCGAGTACACCAATCTCAGCGACCCCAAAG                         ACAGGAAGTTTGGTAAAGGGAAGGATAAGATCGACGATGAGGACATCACCT
genomic: CATGTCCGGGCGCGAGGTCCGCGAGTACACCAATCTCAGCGACCCCAAAGgtgtgcgcct ... gcatgtgcagACAGGAAGTTTGGTAAAGGGAAGGATAAGATCGACGATGAGGACATCACCT
EST: gi|211413441|gb|FL400135.1|FL400135
EST:     CATGTCCGGGCGCGAKGTCCGCGAGTACACCAATCTCAGCGACCCCAAAG                         ACAGGAAGTTTGGTAAAKGGAAGGATAAGATCGACGATGAGGACATCACCT
genomic: CATGTCCGGGCGCGAGGTCCGCGAGTACACCAATCTCAGCGACCCCAAAGgtgtgcgcct ... gcatgtgcagACAGGAAGTTTGGTAAAGGGAAGGATAAGATCGACGATGAGGACATCACCT
EST: gi|211334889|gb|FL419773.1|FL419773
EST:     CATGTCCGGGCGCGAGGTCCGCGAGTACACCAATCTCAGCGACCCCAAAG                         ACAGGAAGTTTGGTAAAGGGAAGGATAAGATCGACGATGAGGACATCACCT
genomic: CATGTCCGGGCGCGAGGTCCGCGAGTACACCAATCTCAGCGACCCCAAAGgtgtgcgcct ... gcatgtgcagACAGGAAGTTTGGTAAAGGGAAGGATAAGATCGACGATGAGGACATCACCT
EST: gi|211385044|gb|FL404090.1|FL404090
EST:     CATGTCCGGGCGCGAGGTCCGCGAGTACACCAATCTCAGCGACCCCAAAG                         ACAGGAAGTTTGGTAAAGGGAAGGATAAGATCGACGATGAGGACATCACCT
genomic: CATGTCCGGGCGCGAGGTCCGCGAGTACACCAATCTCAGCGACCCCAAAGgtgtgcgcct ... gcatgtgcagACAGGAAGTTTGGTAAAGGGAAGGATAAGATCGACGATGAGGACATCACCT
EST: gi|211421419|gb|FL412843.1|FL412843
EST:     CATGTCCGGGCGCGAGGTCCGCGAGTACACCAATCTCAGCGACCCCAAAG                         ACAGGAAGTTTGGTAAAGGGAAGGATAAGATCGACGATGAGGACATCACCT
genomic: CATGTCCGGGCGCGAGGTCCGCGAGTACACCAATCTCAGCGACCCCAAAGgtgtgcgcct ... gcatgtgcagACAGGAAGTTTGGTAAAGGGAAGGATAAGATCGACGATGAGGACATCACCT
EST: gi|32943201|gb|CF048020.1|CF048020
EST:     TACACCAATCTCAGCGACCCCAAAG                         ACAGGAAGTTTGGTAAAGGGAAGGATAAGATCGACGATGGGGACCATCACC
genomic: TACACCAATCTCAGCGACCCCAAAGgtgtgcgcct ... gcatgtgcagACAGGAAGTTTGGTAAAGGGAAGGATAAGATCGACGATGAGGA-CATCACC
EST: gi|211024425|gb|FL373964.1|FL373964
EST:     CATGTCCGGGCGCGAGGTCCGCGAGTACACCAATCTCAGCGACCCCAAAG                         ACAGGAAGTTTGGTAAAGGGAAGGATAAGATNCGACGATGAGGACATCACC
genomic: CATGTCCGGGCGCGAGGTCCGCGAGTACACCAATCTCAGCGACCCCAAAGgtgtgcgcct ... gcatgtgcagACAGGAAGTTTGGTAAAGGGAAGGATAAGAT-CGACGATGAGGACATCACC
EST: gi|211527056|gb|FL387984.1|FL387984
EST:     CATGTCCGGGCGCGAGGTCCGCGAGTACACCAATCTCAGCGACCCCAAAG                         ACAGGAAGTTTGGTAAAGGGAAGGATAAGATCGACGATGAGGACATCACCT
genomic: CATGTCCGGGCGCGAGGTCCGCGAGTACACCAATCTCAGCGACCCCAAAGgtgtgcgcct ... gcatgtgcagACAGGAAGTTTGGTAAAGGGAAGGATAAGATCGACGATGAGGACATCACCT
EST: gi|211500127|gb|FL425199.1|FL425199
EST:     CATGTCCGGGCGCGAGGTCCGCGAGTACACCAATCTCAGCGACCCCAAAG                         ACAGGAAGTTTGGTAAAGGGAAGGATAAGATCGACGATGAGGACATCACCT
genomic: CATGTCCGGGCGCGAGGTCCGCGAGTACACCAATCTCAGCGACCCCAAAGgtgtgcgcct ... gcatgtgcagACAGGAAGTTTGGTAAAGGGAAGGATAAGATCGACGATGAGGACATCACCT
EST: gi|211494457|gb|FL428223.1|FL428223
EST:     CATGTCCGGGCGCGAGGTCCGCGAGTACACCAATCTCAGCGACCCCAAAG                         ACAGGAAGTTTGGTNAAGGGAWGGATAAGATCGACGATGAGGACATCACCT
genomic: CATGTCCGGGCGCGAGGTCCGCGAGTACACCAATCTCAGCGACCCCAAAGgtgtgcgcct ... gcatgtgcagACAGGAAGTTTGGTAAAGGGAAGGATAAGATCGACGATGAGGACATCACCT
EST: gi|211346219|gb|FL403635.1|FL403635
EST:     CATGTCCGGGCGCGAGGTCCGCGAGTACACCAATCTCAGCGACCCCAAAG                         ACAGGAAGTTTGGTAAAGGGAAGGATAAGATCGACGATGAGGACATCACCT
genomic: CATGTCCGGGCGCGAGGTCCGCGAGTACACCAATCTCAGCGACCCCAAAGgtgtgcgcct ... gcatgtgcagACAGGAAGTTTGGTAAAGGGAAGGATAAGATCGACGATGAGGACATCACCT
EST: gi|93016518|gb|EB642038.1|EB642038
EST:     CGAGTACACCAATCTCAGCGACCCCAAAG                         ACAGGAAGTTTGGTAAAGGGAAGGATAAGATCGACGATGAGGACATCACCT
genomic: CGAGTACACCAATCTCAGCGACCCCAAAGgtgtgcgcct ... gcatgtgcagACAGGAAGTTTGGTAAAGGGAAGGATAAGATCGACGATGAGGACATCACCT
EST: gi|211271661|gb|FL410597.1|FL410597
EST:     CATGTCCGGGCGCGAGGTCCGCGAGTACACCAATCTCAGCGACCCCAAAG                         ACAGGAAGTTTGGTAAAGGGAAGGATAAGATCGACGATGAGGACATCACCT
genomic: CATGTCCGGGCGCGAGGTCCGCGAGTACACCAATCTCAGCGACCCCAAAGgtgtgcgcct ... gcatgtgcagACAGGAAGTTTGGTAAAGGGAAGGATAAGATCGACGATGAGGACATCACCT
EST: gi|211039375|gb|FL382073.1|FL382073
EST:     CATGTCCGGGCGCGAGGTCCGCGAGTACACCAATCTCAGCGACCCCAAAG                         ACAGGAAGTTTGGTAAAGGGAAGGATAAGATCGACGATGAGGACATCACCT
genomic: CATGTCCGGGCGCGAGGTCCGCGAGTACACCAATCTCAGCGACCCCAAAGgtgtgcgcct ... gcatgtgcagACAGGAAGTTTGGTAAAGGGAAGGATAAGATCGACGATGAGGACATCACCT
EST: gi|89758028|gb|DY687371.1|DY687371
EST:     CATGGCCGGGCGCGAGGGCCGCGAGTACACCAATCTCAGCGACCCCAAAG                         ACAGGAAGTTTGGTAAAGGGAAGGATAAGATCGACGATGAGGACATCACCT
genomic: CATGTCCGGGCGCGAGGTCCGCGAGTACACCAATCTCAGCGACCCCAAAGgtgtgcgcct ... gcatgtgcagACAGGAAGTTTGGTAAAGGGAAGGATAAGATCGACGATGAGGACATCACCT
EST: gi|58029564|gb|CX724991.1|CX724991
EST:     CATGTCCGGGCGCGAGGTCCGCGAGTACACCAATCTCAGCGACCCCAAAG                         ACAGGAAGTTTGGTAAAGGGAAGGATAAGATCGACGATGAGGACATCACCT
genomic: CATGTCCGGGCGCGAGGTCCGCGAGTACACCAATCTCAGCGACCCCAAAGgtgtgcgcct ... gcatgtgcagACAGGAAGTTTGGTAAAGGGAAGGATAAGATCGACGATGAGGACATCACCT
EST: gi|33771049|gb|CF273343.1|CF273343
EST:     CATGTCCGGGCGCGAGGTCCGCGAGTACACCAATCTCAGCGACCCCAAAG                         ACAGGAAGTTTGGTAAAGGGAAGGATAAGATCGACGATGAGGACATCACCT
genomic: CATGTCCGGGCGCGAGGTCCGCGAGTACACCAATCTCAGCGACCCCAAAGgtgtgcgcct ... gcatgtgcagACAGGAAGTTTGGTAAAGGGAAGGATAAGATCGACGATGAGGACATCACCT