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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTTCCGCGGAGCGCGCACAAGGACTCGCCCGCCGTGGCGGACGTCTGGCCGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAGgtcaggattaacacatctcgttcgtgtgatcgtttttttaaaagattgtgatgcgagcgctagtagtcgatgcagaacataatgtgttccacgttcattt...

Basic information

species Zea mays
transcript GRMZM2G145376_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G145376_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA03G29850.2 (Glycine max), 5'ss of exon 1
CGTTCCGCGGAGCGCGCACAAGGACTCGCCCGCCGTGGCGGACGTCTGGCCGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAGgtcaggattaacacatctcgttcgtgtgatcgttt--ttttaaaagattgtgatgcgagcgctagtagtcgatgcagaacata-atgtgttccacgttcattt-
  | |  | | || |||||||||||||  ||||||| || || |||||||| ||||||||||| ||||| || ||| | ||||| ||||| ||| | |||||  | |||  |   | || ||||     ||  ||   ||| |   |    |||| |     ||     | || | | ||  | |||   | |  |  || |  
GCTCCTCCCGCGCACGCACAAGGACTCCGCCGCCGTCGCCGATGTCTGGCCTTCCACCTCCGCCTTCGACGGCTACTTGTCCGCACTCTCGCCGCTTCAGgt--gaattctccgttttccttcgatccttctattatctttgatgcaagtcgatgtgttgtttaacg--ctattcggcacggagatgctgttcgggaccaatac

upper sequence: GRMZM2G145376_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA19G32740.1 (Glycine max), 5'ss of exon 1
CGTTCCGCGGAGCGCGCACAAGGACTCGCCCGCCGTGGCGGACGTCTGGCCGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAGgtcaggattaacacatctcgttcg--tgtgatcgtttttttaaaagattgtgatgcgagcgctagtagtcgatgcagaacataatg-tgttccacgttcattt
  | |  | | |  |||||||||||||  |||||||  | ||||||||||| ||||||||||| |||||||| ||| | || || ||||| ||| | |||||  | |||  |   | || ||||    |  |  | | ||| | | | |  |||  |   | ||   |    |    |     ||| || | |      ||  
GCTCCTCCCGCGAACGCACAAGGACTCCGCCGCCGTCACCGACGTCTGGCCTTCCACCTCCGCCTTCGATGGCTACTTGTCTGCTCTCTCGCCGCTTCAGgt--gaattctccgttttccttcgatccttgtattctctttgacacaattcgatttgt-tgttaaacgctattaggcacagggatgctgcttcggaccaatac

upper sequence: GRMZM2G145376_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA03G29860.1 (Glycine max), 5'ss of exon 1
CGTTCCGCGGAGCGCGCACAAGGACTCGCCCGCCGTGGCGGACGTCTGGCCGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAGgtcaggattaacacatctcgttcgtgtgatcgtttttttaaaagattgtgatgcga-gcgctagtagtcgatgcagaacataatgtgttccacgttcattt------
  | |  | | || |||||||||||||  ||||||| || || |||||||| ||||||||||| ||||| || ||| | ||||| ||||| ||| | |||||  | |||      | || |||   |  | | |||||         |  || ||| | | || |   || |||     || | |  ||      |  ||       
GCTCCTCCCGCGCACGCACAAGGACTCCGCCGCCGTCGCCGATGTCTGGCCTTCCACCTCCGCCTTCGACGGCTACTTGTCCGCTCTCTCGCCGCTTCAGgt--gaattcttcgttttccttca-atcctagctttttcggtga--cgcaattcgatgtgttattctgcggtgcgc--tattaggcattgaggtgttgttctggagt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211288680|gb|FL312631.1|FL312631
EST:     CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAG                         CTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
genomic: CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAGgtcaggatta ... ttttttgcagCTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
EST: gi|148945185|gb|EC890388.2|EC890388
EST:     CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAG                         CTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
genomic: CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAGgtcaggatta ... ttttttgcagCTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
EST: gi|211208734|gb|FL358266.1|FL358266
EST:     CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAG                         CTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
genomic: CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAGgtcaggatta ... ttttttgcagCTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
EST: gi|149071042|gb|EE159445.2|EE159445
EST:     GCCCACCTCCCGCGT-CGATGGGTACCTCTCCGCGCTCTCCCCGATCCAG                         CTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAGGCTGATGAAGAA
genomic: GTCCACCTCC-GCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAGgtcaggatta ... ttttttgcagCTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
EST: gi|211012394|gb|FL319255.1|FL319255
EST:     CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAG                         CTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
genomic: CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAGgtcaggatta ... ttttttgcagCTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
EST: gi|78079827|gb|DV508239.1|DV508239
EST:     CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAG                         CTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
genomic: CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAGgtcaggatta ... ttttttgcagCTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
EST: gi|211347336|gb|FL342021.1|FL342021
EST:     CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAG                         CTTGTTCGCAGCAACAGCCGCCGTTTTATGCTTTCTCAAGCTGATGAAGAA
genomic: CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAGgtcaggatta ... ttttttgcagCTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
EST: gi|211392160|gb|FL368046.1|FL368046
EST:     CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAG                         CTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
genomic: CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAGgtcaggatta ... ttttttgcagCTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
EST: gi|211260626|gb|FL351803.1|FL351803
EST:     CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAG                         CTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
genomic: CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAGgtcaggatta ... ttttttgcagCTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
EST: gi|211089442|gb|FL362867.1|FL362867
EST:     CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAG                         CTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGATGATGAAGAA
genomic: CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAGgtcaggatta ... ttttttgcagCTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
EST: gi|148935831|gb|EC879879.2|EC879879
EST:     CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAG                         CTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
genomic: CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAGgtcaggatta ... ttttttgcagCTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
EST: gi|211158616|gb|FL316326.1|FL316326
EST:     CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAG                         CTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGAT
genomic: CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAGgtcaggatta ... ttttttgcagCTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGAT
EST: gi|211303808|gb|FL321303.1|FL321303
EST:     CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAG                         CTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
genomic: CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAGgtcaggatta ... ttttttgcagCTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
EST: gi|76934101|gb|DV173728.1|DV173728
EST:     CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAG                         CTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
genomic: CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAGgtcaggatta ... ttttttgcagCTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
EST: gi|89762105|gb|DY689855.1|DY689855
EST:     CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAG                         CTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
genomic: CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAGgtcaggatta ... ttttttgcagCTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
EST: gi|148946192|gb|EC891487.2|EC891487
EST:     CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAG                         CTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
genomic: CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAGgtcaggatta ... ttttttgcagCTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
EST: gi|211424273|gb|FL309087.1|FL309087
EST:     CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAG                         CTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
genomic: CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAGgtcaggatta ... ttttttgcagCTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
EST: gi|149011570|gb|EE042404.2|EE042404
EST:     CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAG                         CTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
genomic: CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAGgtcaggatta ... ttttttgcagCTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
EST: gi|211316366|gb|FL341233.1|FL341233
EST:     CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAG                         CTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
genomic: CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAGgtcaggatta ... ttttttgcagCTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
EST: gi|148978503|gb|EE026182.2|EE026182
EST:     CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAG                         CTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
genomic: CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAGgtcaggatta ... ttttttgcagCTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
EST: gi|211263174|gb|FL356041.1|FL356041
EST:     CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAG                         CTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
genomic: CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAGgtcaggatta ... ttttttgcagCTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
EST: gi|211390755|gb|FL310442.1|FL310442
EST:     CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAG                         CTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
genomic: CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAGgtcaggatta ... ttttttgcagCTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA