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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttttagctgtgctgccatcttccatttcaaatggttagattggctattcaaaatcatctctgacatgcctttaattatttcaatttatattttttgcagCTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAAATTCATCAGTTGTCCTTTCTGCAAAAGCATATGGCGAATATTCTTACTC

Basic information

species Zea mays
transcript GRMZM2G145376_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G145376_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA03G29860.1 (Glycine max), 3'ss of exon 1
gttttagctgtgctgccatcttccatttcaaatggttagattggctat--tcaaaatcatctctgacatgcctttaattatttcaat-ttatattttttgcagCTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAAATTCATCAGTTGTCCTTTCTGCAAAAGCATATGGCGAATATTCTTACTC
  ||||  | |  |   | ||     |        ||  ||| | |||  |   | |  | | |   || |  ||  | |||   || ||| || |||||||||| || ||||||||||| || || |||||||| || || |||||||||||    ||||| ||||| | ||||||||||||  |||| || ||| |  |||
-attta--tttattattagctggtgatcggtgctttttcattcgttatgattctatttctgtttcctattctgttgttgattctgatgttaaatgttttgcagCTCGTACGCAGCAACAGTCGGCGGTTTATGCCGTCCCAGGCTGATGAAGAGGCACATCAATTGTCGTATCTGCAAAAGCACTTGGCTAACATTGTGTCTC

upper sequence: GRMZM2G145376_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA19G32750.1 (Glycine max), 3'ss of exon 1
------------------------------------------------------------------gttttagctgtgctgccatc--ttccatttcaaatggttagattggctattcaaaatcatctctgacatgcctttaattatttcaatttatattttttgcagCTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAAATTCATCAGTTGTCCTTTCTGCAAAAGCATATGGCGAATATTCTTACTC
                                                                   | |    |   ||||   |  ||   |||  | || ||   |||   |||  | |  |     || |   | || ||  | | |  ||  || |||||||||| || ||||||||||| || || |||||||| || || |||||||||||    ||||||||||| | ||||||||||||  |||| || ||| |  |||
gtattctttattttttagctggtgtttggtgcttttttgttcgtgatgactctatttctatttgatttctgtattaaactgctggcaattttgttttgagtgattctgttgttgatttgatactaaactagaaa--gcgttgat--tctgatattgaatgttttgcagCTCGTACGCAGCAACAGTCGGCGGTTTATGCCGTCCCAGGCTGATGAAGAGGCGCATCAGTTGTCGTATCTGCAAAAGCACTTGGCTAACATTGTGTCTC

upper sequence: GRMZM2G145376_T01 (Zea mays), 3'ss of exon 1
lower sequence: AT3G57890.2 (Arabidopsis thaliana), 3'ss of exon 2
gttttagctgtgctgccatcttccatttcaaatggttagattggctattcaaaatcatctctgacatgcctttaattatttcaatttatattttttgcagCTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAAATTCATCAGTTGTCCTTTCTGCAAAAGCATATGGCGAATATTCTTACTC
        | | ||  | | |  |||  ||   |||   |    || |     | |       |  ||   || ||   | |  || ||  ||| ||||||||||||||||||||||||| || |||||||| || || || ||||| |||  |||||||||||| | ||||||||| ||| | || || ||  || |||
-------gtattctatcgtttctcatcacatg-ggtcgaaccaactttattggagc----taaaattgttatttatatctccttttcatcatttctgcagCTTGTTCGCAGCAACAGCCGTCGATTTATGCCATCACAGGCAGATGATGAAGCTCATCAGTTGTCATATCTGCAAAAACATTTAGCAAACATCATTTCTC

upper sequence: GRMZM2G145376_T01 (Zea mays), 3'ss of exon 1
lower sequence: AT2G42230.1 (Arabidopsis thaliana), 3'ss of exon 1
gttttagctgtg-ctgccatctt--ccatttcaaatggttagattggctattcaaaatcatctctgacatgcctttaattatttcaatttatattttttgcagCTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAAATTCATCAGTTGTCCTTTCTGCAAAAGCATATGGCGAATATTCTTACTC
 ||||| |  |   ||   || |  |  |||| |     | | | |     ||    |      |||  |    ||||  |||||  || ||   | |||||||||||||| ||||||||||| || |||||||| || |   | |||||||||  |||||| || || | |||||||||||| || || |||||| || |||
attttaccgataattgttctcattactgtttctatcatatgggtagagacatccttgtagctgttgagtttaagttaa--atttcctttcat-catcttgcagCTTGTTCGTAGCAACAGCCGTCGGTTTATGCCATCACCGACAGATGAAGAAGCTCATCAATTATCGTATCTGCAAAAGCACATTGCAAATATTATTTCTC

upper sequence: GRMZM2G145376_T01 (Zea mays), 3'ss of exon 1
lower sequence: AT3G57890.1 (Arabidopsis thaliana), 3'ss of exon 1
-----gttttagctgtgctgccatcttccatttcaaatggttagattggctattcaaaatcatctctgacatgcctttaattatttcaatttatattttttgcagCTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAAATTCATCAGTTGTCCTTTCTGCAAAAGCATATGGCGAATATTCTTACTC
      | || | | | ||  | | |  |||  ||   |||   |    || |     | |       |  ||   || ||   | |  || ||  ||| ||||||||||||||||||||||||| || |||||||| || || || ||||| |||  |||||||||||| | ||||||||| ||| | || || ||  || |||
cactgttctttggtattctatcgtttctcatcacatg-ggtcgaaccaactttattggagc----taaaattgttatttatatctccttttcatcatttctgcagCTTGTTCGCAGCAACAGCCGTCGATTTATGCCATCACAGGCAGATGATGAAGCTCATCAGTTGTCATATCTGCAAAAACATTTAGCAAACATCATTTCTC

upper sequence: GRMZM2G145376_T01 (Zea mays), 3'ss of exon 1
lower sequence: Vv08s0007g06190.t01 (Vitis vinifera), 3'ss of exon 1
gttttagctgtgctgccatcttccatttcaaatggttagattggctattcaaaat-catctctgacatgcctttaa--ttatttcaatttatattttttgcagCTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAAATTCATCAGTTGTCCTTTCTGCAAAAGCATATGGCGAATATTCTTACTC
    || |  | |||   ||||   | |  | | | ||  |    | || |   |   |     |  ||   |||   |||| ||  ||        ||||||||||| ||||||||||||||  | ||||||||||| ||||| ||||||||   |||||| || |||| | | ||||||||  |||| || || ||| | |
---ctaacaattctgatttcttatttatgtagttgatacttaaattttttatgttgtgttgtcaaactgaacttacccttatctcggttcgatcaaattgcagCTTGTCCGCAGCAACAGCCGGAGGTTTATGCCTTCACAAGCCGATGAAGAGGCTCATCAATTATCCTATTTACAAAAGCACTTGGCTAACATCCTTTCAC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211288680|gb|FL312631.1|FL312631
EST:     CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAG                         CTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
genomic: CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAGgtcaggatta ... ttttttgcagCTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
EST: gi|148945185|gb|EC890388.2|EC890388
EST:     CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAG                         CTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
genomic: CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAGgtcaggatta ... ttttttgcagCTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
EST: gi|211208734|gb|FL358266.1|FL358266
EST:     CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAG                         CTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
genomic: CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAGgtcaggatta ... ttttttgcagCTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
EST: gi|149071042|gb|EE159445.2|EE159445
EST:     GCCCACCTCCCGCGT-CGATGGGTACCTCTCCGCGCTCTCCCCGATCCAG                         CTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAGGCTGATGAAGAA
genomic: GTCCACCTCC-GCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAGgtcaggatta ... ttttttgcagCTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
EST: gi|211012394|gb|FL319255.1|FL319255
EST:     CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAG                         CTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
genomic: CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAGgtcaggatta ... ttttttgcagCTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
EST: gi|78079827|gb|DV508239.1|DV508239
EST:     CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAG                         CTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
genomic: CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAGgtcaggatta ... ttttttgcagCTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
EST: gi|211347336|gb|FL342021.1|FL342021
EST:     CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAG                         CTTGTTCGCAGCAACAGCCGCCGTTTTATGCTTTCTCAAGCTGATGAAGAA
genomic: CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAGgtcaggatta ... ttttttgcagCTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
EST: gi|211392160|gb|FL368046.1|FL368046
EST:     CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAG                         CTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
genomic: CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAGgtcaggatta ... ttttttgcagCTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
EST: gi|211260626|gb|FL351803.1|FL351803
EST:     CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAG                         CTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
genomic: CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAGgtcaggatta ... ttttttgcagCTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
EST: gi|211089442|gb|FL362867.1|FL362867
EST:     CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAG                         CTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGATGATGAAGAA
genomic: CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAGgtcaggatta ... ttttttgcagCTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
EST: gi|148935831|gb|EC879879.2|EC879879
EST:     CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAG                         CTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
genomic: CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAGgtcaggatta ... ttttttgcagCTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
EST: gi|211158616|gb|FL316326.1|FL316326
EST:     CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAG                         CTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGAT
genomic: CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAGgtcaggatta ... ttttttgcagCTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGAT
EST: gi|211303808|gb|FL321303.1|FL321303
EST:     CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAG                         CTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
genomic: CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAGgtcaggatta ... ttttttgcagCTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
EST: gi|76934101|gb|DV173728.1|DV173728
EST:     CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAG                         CTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
genomic: CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAGgtcaggatta ... ttttttgcagCTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
EST: gi|89762105|gb|DY689855.1|DY689855
EST:     CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAG                         CTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
genomic: CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAGgtcaggatta ... ttttttgcagCTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
EST: gi|148946192|gb|EC891487.2|EC891487
EST:     CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAG                         CTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
genomic: CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAGgtcaggatta ... ttttttgcagCTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
EST: gi|211424273|gb|FL309087.1|FL309087
EST:     CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAG                         CTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
genomic: CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAGgtcaggatta ... ttttttgcagCTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
EST: gi|149011570|gb|EE042404.2|EE042404
EST:     CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAG                         CTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
genomic: CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAGgtcaggatta ... ttttttgcagCTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
EST: gi|211316366|gb|FL341233.1|FL341233
EST:     CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAG                         CTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
genomic: CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAGgtcaggatta ... ttttttgcagCTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
EST: gi|148978503|gb|EE026182.2|EE026182
EST:     CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAG                         CTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
genomic: CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAGgtcaggatta ... ttttttgcagCTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
EST: gi|211263174|gb|FL356041.1|FL356041
EST:     CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAG                         CTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
genomic: CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAGgtcaggatta ... ttttttgcagCTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
EST: gi|211390755|gb|FL310442.1|FL310442
EST:     CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAG                         CTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA
genomic: CGTCCACCTCCGCGTTCGATGGGTACCTCTCCGCGCTCTCCCCGATCCAGgtcaggatta ... ttttttgcagCTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattcaaaatcatctctgacatgcctttaattatttcaatttatattttttgcagCTTGTTCGCAGCAACAGCCGCCGTTTTATGCCTTCTCAAGCTGATGAAGAAATTCATCAGTTGTCCTTTCTGCAAAAGCATATGGCGAATATTCTTACTC
                                           tatttttt  CT-rich tract
                    atgcctttaattattt  TA-rich tract