1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtttgtgtgtctacagtgtagacttccctactcctttgcagtttgcagaccataaatactgtcaaactgatttatgactcacagttatcttgttcttagaattatctgtaatttttttcttgtttgtagGATCTGGAAATACCTGATCGATAACCCGGACTGGGAAGAGACGTTCCCAAAACACAAGCCCCGGGTGTTCCATAGGGCAAGCGACGGAAGCTGGTCAAGG
species | Zea mays |
transcript | GRMZM2G144362_T03 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAG GATCTGGAAATACCTGATCGATAACCCGGACTGGGAAGAGACGTTCCCAAAEST: gi|93281087|gb|EB673351.1|EB673351
genomic: TCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAGgtttgtgtgt ... ttgtttgtagGATCTGGAAATACCTGATCGATAACCCGGACTGGGAAGAGACGTTCCCAAA
EST: TCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAG GATCTGGAAATACCTGATCGATAACCCGGACTGGGAAGAGACGTTCCCAAA
genomic: TCCACCTCTCCAGCCGCAGAACCACCTCACTTCGTGGAAAACGAAAGAAGgtttgtgtgt ... ttgtttgtagGATCTGGAAATACCTGATCGATAACCCGGACTGGGAAGAGACGTTCCCAAA
tgactcacagttatcttgttcttagaattatctgtaatttttttcttgtttgtagGATCTGGAAATACCTGATCGATAACCCGGACTGGGAAGAGACGTTCCCAAAACACAAGCCCCGGGTGTTCCATAGGGCAAGCGACGGAAGCTGGTCAAGG
gactcac putative branch site (score: 2)
tttttttcttgtttgt putative PPT
ttagaattatctgtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtgtgtctacagtgtagacttccctactcctttgcagtttgcagaccataaatactgtcaaactgatttatgactcacagttatcttgttcttagaattatctgtaatttttttcttgtttgtagGATCTGGAAATACCTGATCGATAACCCGGACTGGGAAGAGACGTTCCCAAAACACAAGCCCCGGGTGTTCCATAGGGCAAGCGACGGAAGCTGGTCAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG