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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCGTGTGAGCGTTAGCTCTTATGATCCAACTTGGCAAGGAAGGTTGCTGGAGACTTACGATACTCAGGACGATGTTTTCCAAATTGCACCTGCCTGCTGgtatctaaaatcctcccatcgtctttatttgcatgtttcaaactctttgtgcttaacatccacgtttctgaactctgagctactgtttcagtagttattt...

Basic information

species Zea mays
transcript GRMZM2G144362_T03
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G144362_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os06g41390.2 (Oryza sativa), 5'ss of exon 7
TTCGTGTGAGCGTTAGCTCTTATGATCCAACTTGGCAAGGAAGGTTGCTGGAGACTTACGATACTCAGGACGATGTTTTCCAAATTGCACCTGCCTGCTGgtat-----ctaaaatcctcccatcgtctttatttgcatgtttcaaactctttgtgcttaacatccacgtttctgaactctgagctactgtttcagtagttattt
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TTCGTGTGAGCGTTTCTTCTTATGATCCAAATTGGCAAGGAAGGCTACTAGAGACTTATGATACTCACAGTGATGCTTTTGAAATTGCACCTGCCTGCTGgtgtgtatcttaaaacatttccatc----caatttacgaaggaaagagtttat-tccacaacctcaattcttctgaaagtctagaaatcaactccctcaaattct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89246991|gb|DY618777.1|DY618777
EST:     GAGACTTACGATACTCAGGACGATGTTTTCCAAATTGCACCTGCCTGCTG                         TACATGCCTTGTTTGCTTACAGTTTTCCCTTACCATAAAATCCATCGCCTG
genomic: GAGACTTACGATACTCAGGACGATGTTTTCCAAATTGCACCTGCCTGCTGgtatctaaaa ... tcggaaacagTACATGCCTTGTTTGCTTACAGTTTTCCCTTACCATAAAATCCATCGCCTG