Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGCGACATCGGCTCCGGCAACTTCGGCGTTGCCCGCCTCATGCGCGACCGCCGCACCAGCGAACTCGTCGCCGTCAAGTACATCGAGCGCGGCGAGAAGgtatcgctctgatcccgttctccctcccctgtggattcgattcggcgctagctgtagttaattaataacccatcgattccacctcacggagtttgcgttc...

Basic information

species Zea mays
transcript GRMZM2G138861_T03
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G138861_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g55600.1 (Oryza sativa), 5'ss of exon 1
GCGCGACATCGGCTCCGGCAACTTCGGCGTTGCCCGCCTCATGCGCGACCGCCGCACCAGCGAACTCGTCGCCGTCAAGTACATCGAGCGCGGCGAGAAGgtatcgct-ctgatcccg----ttctccctcccctgtggattcgattcggcgctagctgtagttaattaataacccatcgattccacctcacggagtttgcgttc
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  || |||||||||||||||||||||||||||||||||||||||  ||  ||||  ||     ||||||  ||  | | | |||||||||||||| ||||    | ||  ||   | | |   |   ||  |  | |   |  || 
GCGCGACATCGGCTCCGGCAACTTCGGCGTCGCCCGCCTCATGCGCGACCGCCGCACCATGGAGCTCGTCGCCGTCAAGTACATCGAGCGCGGCGAGAAGgtacggccgctgactccccgccttctcctccctttctagcttcgattcggcgctggctgag--tgatcgat--tcgacccggtgtgcccaaacgtggccgattt-

upper sequence: GRMZM2G138861_T02 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA05G09460.1 (Glycine max), 5'ss of exon 1
GCGCGACATCGGCTCCGGCAACTTCGGCGTTGCCCGCCTCATGCGCGACCGCCGCACCAGCGAACTCGTCGCCGTCAAGTACATCGAGCGCGGCGAGAAGgt-atcgctctgatcccgttctccctcccctgtggattcgattcggcgctagctgtagttaattaataacccatcgattccacctcacggagtttgcgttc
 ||||||||||| ||||| || |||||||| ||  | || ||||  ||    |  ||||  ||||||||||||||||||||||||||  | || || |||||  | | | |  ||    |   ||          |    | |   |  |  ||||  ||  ||  |          |      |   |  |||  |  | 
CCGCGACATCGGGTCCGGAAATTTCGGCGTGGCGAGGCTGATGCAGGATAAACAAACCAAGGAACTCGTCGCCGTCAAGTACATCGAAAGGGGTGATAAGgttgttgtttttgtctgaatgaaccaatgacccaaaca-aacttttctttttctgttttttttttttcgttttgttttcttggttggtgctgttgcccctt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33467528|gb|CF244577.1|CF244577
EST:     CCGCACCAGCGAACTCGTCGCCGTCAAGTACATCGAGCGCGGCGAGCACG                         ATAGATGAGAATGTCCAGCGCGAGATAATTAACCATAGATCATTGAAGCA
genomic: CCGCACCAGCGAACTCGTCGCCGTCAAGTACATCGAGCGCGGCGAGAA-Ggtatcgctct ... tcatgtgcagATAGATGAGAATGTCCAGCGTGAGATAATTAACCATAGATCATTGAAGCA
EST: gi|30087424|gb|CB885630.1|CB885630
EST:     GCCGCACCAGCGAACTCGTCGCCGTCAAGTACATCGAGCGCGGCGAGAAG                         ATAGATGAGAATGTCCAGCGTGAGATAATTAACCATAGATCATTGAAGCAC
genomic: GCCGCACCAGCGAACTCGTCGCCGTCAAGTACATCGAGCGCGGCGAGAAGgtatcgctct ... tcatgtgcagATAGATGAGAATGTCCAGCGTGAGATAATTAACCATAGATCATTGAAGCAC