1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' |
gtatgtagtttgatatttgtctctctattttgggtcattttgttttttaaacagttgaagttcttgctcttttagGATAACAACCCGAACAATCTGGTTGCATGCACGACATTCTTTTCTGAAGCAACACGTGCCATGCTTTGTCTG
species | Zea mays |
transcript | GRMZM2G137236_T01 |
intron # | 24 |
splice site | 3' |
intron type | U2 |
EST: AGATGGCTAATCTTTTCATGAGCCTTCACTTGGCGGTCGCTCCTGGACTT GATAACAACCCGAACAATCTGGTTGCATGCACGACATTCTTTTCTGAAGCAEST: gi|37395386|gb|CF634973.1|CF634973
genomic: AGATGGCTAATCTTTTCATGAGCCTTCACTTGGCGGTCGCTCCTGGACTTgtatgtagtt ... gctcttttagGATAACAACCCGAACAATCTGGTTGCATGCACGACATTCTTTTCTGAAGCA
EST: AGATGGCTAATCTTTTCATGAGCCTTCACTTGGCGGTCGCTCCTGGACTT GATAACAACCCGAACAATCTGGTTGCATGCACGACATTCTTTTCTGAAGCAEST: gi|40336758|gb|CK370828.1|CK370828
genomic: AGATGGCTAATCTTTTCATGAGCCTTCACTTGGCGGTCGCTCCTGGACTTgtatgtagtt ... gctcttttagGATAACAACCCGAACAATCTGGTTGCATGCACGACATTCTTTTCTGAAGCA
EST: AGATGGCTAATCTTTTCATGAGCCTTCACTTGGCGGTCGCTCCTGGACTT GATAACAACCCGAACAATCTGGTTGCATGCACGACATTCTTTTCTGAAGCAEST: gi|38502665|gb|CF972525.1|CF972525
genomic: AGATGGCTAATCTTTTCATGAGCCTTCACTTGGCGGTCGCTCCTGGACTTgtatgtagtt ... gctcttttagGATAACAACCCGAACAATCTGGTTGCATGCACGACATTCTTTTCTGAAGCA
EST: GATGGCTAATCTTTTCATGAGCCTTCCCTTGGGCGGTCGCTCCTGGACTT GATA-CAACCCGAATAATCTGGTTGCATGCACGAEST: gi|113704027|gb|EE681531.1|EE681531
genomic: GATGGCTAATCTTTTCATGAGCCTTCACTTGG-CGGTCGCTCCTGGACTTgtatgtagtt ... gctcttttagGATAACAACCCGAACAATCTGGTTGCATGCACGA
EST: AGATGGCTAATCTTTTCATGAGCCTTCACTTGGCGGTCGCTCCTGGACTT GATAACAACCCGAACAATCTGGTTGCATGCACGACATTCTTTTCTGAAGCAEST: gi|67018440|gb|CO447189.1|CO447189
genomic: AGATGGCTAATCTTTTCATGAGCCTTCACTTGGCGGTCGCTCCTGGACTTgtatgtagtt ... gctcttttagGATAACAACCCGAACAATCTGGTTGCATGCACGACATTCTTTTCTGAAGCA
EST: AGATGGCTAATCTTTTCATGAGCCTTCACTTGGCGGTCGCTCCTGGACTT GATAACAACCCGAACAATCTGGTTGCATGCACGACATTCTTTTCTGAAGCAEST: gi|211430871|gb|FL250419.1|FL250419
genomic: AGATGGCTAATCTTTTCATGAGCCTTCACTTGGCGGTCGCTCCTGGACTTgtatgtagtt ... gctcttttagGATAACAACCCGAACAATCTGGTTGCATGCACGACATTCTTTTCTGAAGCA
EST: AGATGGCTAATCTTTTCATGAGCCTTCACTTGGCGGTCGCTCCTGGACTT GATAACAACCCGAACAATCTGGTTGCATGCACGACATTCTTTTCTGAAGCAEST: gi|213169610|gb|FM186192.1|FM186192
genomic: AGATGGCTAATCTTTTCATGAGCCTTCACTTGGCGGTCGCTCCTGGACTTgtatgtagtt ... gctcttttagGATAACAACCCGAACAATCTGGTTGCATGCACGACATTCTTTTCTGAAGCA
EST: AGATGGCTAATCTTTTCATGAGCCTTCACTTGGCGGTCGCTCCTGGACTT GATAACAACCCGAACAATCTGGTTGCATGCACGACATTCTTTTCTGAAGCA
genomic: AGATGGCTAATCTTTTCATGAGCCTTCACTTGGCGGTCGCTCCTGGACTTgtatgtagtt ... gctcttttagGATAACAACCCGAACAATCTGGTTGCATGCACGACATTCTTTTCTGAAGCA
ctctctattttgggtcattttgttttttaaacagttgaagttcttgctcttttagGATAACAACCCGAACAATCTGGTTGCATGCACGACATTCTTTTCTGAAGCAACACGTGCCATGCTTTGTCTG
ttcttgctctttt CT-rich tract
tcattttgttttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtagtttgatatttgtctctctattttgggtcattttgttttttaaacagttgaagttcttgctcttttagGATAACAACCCGAACAATCTGGTTGCATGCACGACATTCTTTTCTGAAGCAACACGTGCCATGCTTTGTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA