1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cttgctttgctgtcatagagctagcgtcgagcataacttcatgcttggatcgtatgcttattgttcctcaatttcacgcacagtcatttttctctcccagGAAAGATGAATCTGTGATTTCCACAGATGGTGGAAATGAGGAGACAGACACTGACAGCCTCCATGTTGCTAGAGGATTGTCTCATCCTGGGCTTTCGTCA
species | Zea mays |
transcript | GRMZM2G136389_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCCCCCGTGGACGAAGCTTCCTCCACCGGCGCCTCGCTACCTCGCCTAT GAAAGATGAATCTGTGATTTCCACAGATGGTGGAAATGAGGAGACAGACACEST: gi|211505073|gb|FK974741.1|FK974741
genomic: TTCCCCCGTGGACGAAGCTTCCTCCACCGGCGCCTCGCTACCTCGCCTATgtgagcactt ... tctctcccagGAAAGATGAATCTGTGATTTCCACAGATGGTGGAAATGAGGAGACAGACAC
EST: TTCCCCCGTGGACGAAGCTTCCTCCACCGGCGCCTCGCTACCTCGCCTAT GAAAGATGAATCTGTGATTTCCACAGATGGTGGAAATGAGGAGACAGACACEST: gi|71438179|gb|DR819229.1|DR819229
genomic: TTCCCCCGTGGACGAAGCTTCCTCCACCGGCGCCTCGCTACCTCGCCTATgtgagcactt ... tctctcccagGAAAGATGAATCTGTGATTTCCACAGATGGTGGAAATGAGGAGACAGACAC
EST: TTCCCCCGTGGACGAAGCTTCCTCCACCGGCGCCTCGCTACCTCGCCTAT GAAAGATGAATCTGTGATTTCCACAGATGGTGGAAATGAGGAGACAGACACEST: gi|211505075|gb|FK974743.1|FK974743
genomic: TTCCCCCGTGGACGAAGCTTCCTCCACCGGCGCCTCGCTACCTCGCCTATgtgagcactt ... tctctcccagGAAAGATGAATCTGTGATTTCCACAGATGGTGGAAATGAGGAGACAGACAC
EST: TTCCCCCGTGGACGAAGCTTCCTCCACCGGCGCCTCGCTACCTCGCCTAT GAAAGATGAATCTGTGATTTCCACAGATGGTGGAAATGAGGAGACAGACACEST: gi|91878484|gb|EB408441.1|EB408441
genomic: TTCCCCCGTGGACGAAGCTTCCTCCACCGGCGCCTCGCTACCTCGCCTATgtgagcactt ... tctctcccagGAAAGATGAATCTGTGATTTCCACAGATGGTGGAAATGAGGAGACAGACAC
EST: TTCCCCCGTGGACGAAGCTTCCTCCACCGGCGCCTCGCTACCTCGCCTAT GAAAGATGAATCTGTGATTTCCACAGATGGTGGAAATGAGGAGACAGACAC
genomic: TTCCCCCGTGGACGAAGCTTCCTCCACCGGCGCCTCGCTACCTCGCCTATgtgagcactt ... tctctcccagGAAAGATGAATCTGTGATTTCCACAGATGGTGGAAATGAGGAGACAGACAC
tggatcgtatgcttattgttcctcaatttcacgcacagtcatttttctctcccagGAAAGATGAATCTGTGATTTCCACAGATGGTGGAAATGAGGAGACAGACACTGACAGCCTCCATGTTGCTAGAGGATTGTCTCATCCTGGGCTTTCGTCA
tcatttttctctccc CT-rich tract
ttattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgctttgctgtcatagagctagcgtcgagcataacttcatgcttggatcgtatgcttattgttcctcaatttcacgcacagtcatttttctctcccagGAAAGATGAATCTGTGATTTCCACAGATGGTGGAAATGAGGAGACAGACACTGACAGCCTCCATGTTGCTAGAGGATTGTCTCATCCTGGGCTTTCGTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT