1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ccttcaggccccatttatttgtttattttgtgatgtctgctccttctagagattccacatgcggagaaaacatccataatgttgtctacggtctttgcagATTCGAAATGAGAAGGCCAGGAGATATTTGAGCTGCATGCGGAAAAAATATCCCGTGCCCTTTACTCATAAATTTCGACATGCTGATCCTTTGGCTCTTC
species | Zea mays |
transcript | GRMZM2G135904_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATATTATAACAGATCTTCTTGGGACTCCATCATCTGAGACCTTATCCCGG ATTCGAAATGAGAAGGCCAGGAGATATTTGAGCTGCATGCGGAAAAAATATEST: gi|22545672|gb|BU098031.1|BU098031
genomic: ATATTATAACAGATCTTCTTGGGACTCCATCATCTGAGACCTTATCCCGGgtactacatc ... gtctttgcagATTCGAAATGAGAAGGCCAGGAGATATTTGAGCTGCATGCGGAAAAAATAT
EST: ATATTATAACAGATCTTCTTGGGACTCCATCATCTGAGACCTTATCCCGG ATTCGAAATGAGAAGGCCAGGAGATATTTGAGCTGCATGCGGAAAAAATATEST: gi|61118794|gb|DN559755.1|DN559755
genomic: ATATTATAACAGATCTTCTTGGGACTCCATCATCTGAGACCTTATCCCGGgtactacatc ... gtctttgcagATTCGAAATGAGAAGGCCAGGAGATATTTGAGCTGCATGCGGAAAAAATAT
EST: ATATTATAACAGATCTTCTTGGGACTCCATCATCTGAGACCTTATCCCGG ATTCGAAATGAGAAGGCCAGGAGATATTTGAGCTGCATGCGGAAAAAATAT
genomic: ATATTATAACAGATCTTCTTGGGACTCCATCATCTGAGACCTTATCCCGGgtactacatc ... gtctttgcagATTCGAAATGAGAAGGCCAGGAGATATTTGAGCTGCATGCGGAAAAAATAT
ctagagattccacatgcggagaaaacatccataatgttgtctacggtctttgcagATTCGAAATGAGAAGGCCAGGAGATATTTGAGCTGCATGCGGAAAAAATATCCCGTGCCCTTTACTCATAAATTTCGACATGCTGATCCTTTGGCTCTTC
tctttgc CT-rich tract
ataatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccttcaggccccatttatttgtttattttgtgatgtctgctccttctagagattccacatgcggagaaaacatccataatgttgtctacggtctttgcagATTCGAAATGAGAAGGCCAGGAGATATTTGAGCTGCATGCGGAAAAAATATCCCGTGCCCTTTACTCATAAATTTCGACATGCTGATCCTTTGGCTCTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- ttcaggc
- - - - - - - - - - - - - - - - -tgtctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgcgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acatcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgttgt