1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATCCGATCTCGAGGTCATCGAGGACCCGGATCTCCTCGGCCTCCGCGCCATCCGCGTGCCCAAGCGCAAGATGCCGCTGCCCGTCGAGAGCCACAGGAAGgtgagcgaccgactggacccgcctccgttgccttgccttgctcgctcgctcgcttctgtggactgtggactgggtgggggcgggcggacgactctgcctt...
species | Zea mays |
transcript | GRMZM2G135904_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCCGCGTGCCCAAGCGCAAGATGCCGCTGCCCGTCGAGAGCCACAGGAAG AACTCAGTAGAAATGGAGTTCTTCACAGAGTACGGAGAGGCAAGCCAGTACEST: gi|211280416|gb|FL033878.1|FL033878
genomic: TCCGCGTGCCCAAGCGCAAGATGCCGCTGCCCGTCGAGAGCCACAGGAAGgtgagcgacc ... ggtcttacagAACTCAGTAGAAATGGAGTTCTTCACAGAGTACGGAGAGGCAAGCCAGTAC
EST: TCCGCGTGCCCAAGCGCAAGATGCCGCTGCCCGTCGAGAGCCACAGGAAG AACTCAGTAGAAATGGAGTTCTTCACAGAGTACGGAGAGGCAAGCCAGTACEST: gi|211280413|gb|FL033875.1|FL033875
genomic: TCCGCGTGCCCAAGCGCAAGATGCCGCTGCCCGTCGAGAGCCACAGGAAGgtgagcgacc ... ggtcttacagAACTCAGTAGAAATGGAGTTCTTCACAGAGTACGGAGAGGCAAGCCAGTAC
EST: TCCGCGTGCCCAAGCGCAAGATGCCGCTGCCCGTCGAGAGCCACAGGAAG AACTCAGTAGAAATGGAGTTCTTCACAGAGTACGGAGAGGCAAGCCAGTACEST: gi|149100544|gb|EE186629.2|EE186629
genomic: TCCGCGTGCCCAAGCGCAAGATGCCGCTGCCCGTCGAGAGCCACAGGAAGgtgagcgacc ... ggtcttacagAACTCAGTAGAAATGGAGTTCTTCACAGAGTACGGAGAGGCAAGCCAGTAC
EST: TCCGCGTGCCCAAGCGCAAGATGCCGCTGCCCGTCGAGAGCCACAGGAAG AACTCAGTAGAAATGGAGTTCTTCACAGAGTACGGAGAGGCAAGCCAGTACEST: gi|71444921|gb|DR825971.1|DR825971
genomic: TCCGCGTGCCCAAGCGCAAGATGCCGCTGCCCGTCGAGAGCCACAGGAAGgtgagcgacc ... ggtcttacagAACTCAGTAGAAATGGAGTTCTTCACAGAGTACGGAGAGGCAAGCCAGTAC
EST: TCCGCGTGCCCAAGCGCAAGATGCCGCTGCCCGTCGAGAGCCACAGGAAG AACTCAGTAGAAATGGAGTTCTTCACAGAGTACGGAGAGGCAAGCCAGTAC
genomic: TCCGCGTGCCCAAGCGCAAGATGCCGCTGCCCGTCGAGAGCCACAGGAAGgtgagcgacc ... ggtcttacagAACTCAGTAGAAATGGAGTTCTTCACAGAGTACGGAGAGGCAAGCCAGTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCCGATCTCGAGGTCATCGAGGACCCGGATCTCCTCGGCCTCCGCGCCATCCGCGTGCCCAAGCGCAAGATGCCGCTGCCCGTCGAGAGCCACAGGAAGgtgagcgaccgactggacccgcctccgttgccttgccttgctcgctcgctcgcttctgtggactgtggactgggtgggggcgggcggacgactctgcctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgcctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctcgctc